Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AAV34_RS11300 Genome accession   NZ_CP011937
Coordinates   2315333..2316112 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain CBMB205     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2310333..2321112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAV34_RS11270 (AAV34_11005) fliH 2310377..2311132 (-) 756 WP_032874891.1 flagellar assembly protein FliH -
  AAV34_RS11275 (AAV34_11010) fliG 2311125..2312141 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  AAV34_RS11280 (AAV34_11015) fliF 2312154..2313764 (-) 1611 WP_032874889.1 flagellar basal-body MS-ring/collar protein FliF -
  AAV34_RS11285 (AAV34_11020) fliE 2313807..2314127 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  AAV34_RS11290 (AAV34_11025) flgC 2314138..2314590 (-) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  AAV34_RS11295 (AAV34_11030) flgB 2314590..2314979 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  AAV34_RS11300 (AAV34_11035) codY 2315333..2316112 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AAV34_RS11305 (AAV34_11040) hslU 2316150..2317553 (-) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  AAV34_RS11310 (AAV34_11045) hslV 2317570..2318115 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  AAV34_RS11315 (AAV34_11050) xerC 2318131..2319048 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  AAV34_RS11320 (AAV34_11055) trmFO 2319118..2320425 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=149436 AAV34_RS11300 WP_003154263.1 2315333..2316112(-) (codY) [Bacillus velezensis strain CBMB205]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=149436 AAV34_RS11300 WP_003154263.1 2315333..2316112(-) (codY) [Bacillus velezensis strain CBMB205]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment