Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AB831_RS15990 Genome accession   NZ_CP011884
Coordinates   3196564..3197289 (+) Length   241 a.a.
NCBI ID   WP_021448951.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain MAVP-Q     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3191564..3202289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB831_RS15975 (AB831_15045) - 3192667..3194988 (+) 2322 WP_021449011.1 Tex family protein -
  AB831_RS15980 (AB831_15050) - 3195124..3195588 (-) 465 WP_005459035.1 hypothetical protein -
  AB831_RS15985 (AB831_15055) bioH 3195712..3196479 (-) 768 WP_021448994.1 pimeloyl-ACP methyl ester esterase BioH -
  AB831_RS15990 comF 3196564..3197289 (+) 726 WP_021448951.1 ComF family protein Machinery gene
  AB831_RS15995 (AB831_15060) nfuA 3197387..3197971 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  AB831_RS16000 (AB831_15065) nudE 3198192..3198761 (+) 570 WP_021448936.1 ADP compounds hydrolase NudE -
  AB831_RS16005 (AB831_15070) cysQ 3198803..3199630 (+) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AB831_RS16010 (AB831_15075) - 3199916..3200677 (-) 762 WP_021486905.1 type II secretion system protein N -
  AB831_RS16015 (AB831_15080) - 3200679..3201170 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27720.89 Da        Isoelectric Point: 8.9991

>NTDB_id=149259 AB831_RS15990 WP_021448951.1 3196564..3197289(+) (comF) [Vibrio parahaemolyticus strain MAVP-Q]
MLSHHWQNIMHRVLSSQCGLCRFPIQATAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQIWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHAQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=149259 AB831_RS15990 WP_021448951.1 3196564..3197289(+) (comF) [Vibrio parahaemolyticus strain MAVP-Q]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAATATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTATTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGCCCAGTCACAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
CTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATAGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGAGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485

Multiple sequence alignment