Detailed information NTG0149098

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: AS588_RS02900
• Genome accession: NZ_CP014700
• Coordinates: 590065..591333 (-)
• Length: 422 a.a.
• NCBI ID: WP_015387902.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain S499
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 585065..596333

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AS588_RS20000	-	585304..585474 (+)	171	WP_003152722.1	YrzK family protein	-
AS588_RS02880 (AS588_02880)	hisS	585831..587105 (+)	1275	WP_003152726.1	histidine--tRNA ligase	-
AS588_RS02885 (AS588_02885)	aspS	587120..588898 (+)	1779	WP_015387901.1	aspartate--tRNA ligase	-
AS588_RS02895 (AS588_02895)	-	589225..589989 (+)	765	WP_003152728.1	ThiF family adenylyltransferase	-
AS588_RS02900 (AS588_02900)	rarA	590065..591333 (-)	1269	WP_015387902.1	replication-associated recombination protein A	Machinery gene
AS588_RS02905 (AS588_02905)	cymR	591528..591944 (+)	417	WP_003152730.1	cysteine metabolism transcriptional regulator CymR	-
AS588_RS02910 (AS588_02910)	-	591963..593102 (+)	1140	WP_003152731.1	cysteine desulfurase family protein	-
AS588_RS02915 (AS588_02915)	mnmA	593139..594254 (+)	1116	WP_015387903.1	tRNA 2-thiouridine(34) synthase MnmA	-
AS588_RS02920 (AS588_02920)	-	594342..594962 (+)	621	WP_088005508.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46701.58 Da
• Isoelectric Point: 7.9153

>NTDB_id=149098 AS588_RS02900 WP_015387902.1 590065..591333(-) (rarA) [Bacillus amyloliquefaciens strain S499]
MKPLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRELNAVIHNKKDME
IVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIRQALKR
ALTDEHRGLGSYSVSVDDDAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTIRIIRETAEECLQKKSYTHDKNGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESISRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAISAVDEALKDIRTGKIGDVPKHLKDAHYKGAQELGRGIGYQYPHDFENGWVEQQYLPDPLKNKQYYKP
KQTGKFEAAIKQVYEKLMKQKK

Nucleotide

• Length: 1269 bp

>NTDB_id=149098 AS588_RS02900 WP_015387902.1 590065..591333(-) (rarA) [Bacillus amyloliquefaciens strain S499]
ATGAAACCATTGGCGTATCGGATGCGGCCTGCCAATATCGAAGACATTATCGGTCAGGAACATTTGGTCAAAGAAGATAA
AATCATCGGCAGAATGGTGCGTGCGAAGCACTTATCATCCATGATCCTGTACGGACCGCCGGGCATCGGAAAAACGTCCA
TCGCCACAGCGATCGCAGGATCGACAAGCATCGCATTCAGGGAATTGAATGCCGTCATTCATAATAAAAAAGACATGGAG
ATTGTCGTACAGGAAGCGAAAATGTCAGGCCAGGTCATTTTAATCCTTGATGAAGTGCACAGACTTGATAAGGGAAAGCA
GGATTTTCTGCTGCCCTATTTAGAAAACGGCATGATTATTTTAATCGGCGCGACGACCGCCAATCCTTATCATGCCATTA
ACCCGGCCATCAGAAGCCGGACCCAGATATTTGAGCTTGAACCGTTAACACCCGATCTGATCAGGCAGGCATTGAAAAGA
GCGCTCACAGATGAACACCGGGGACTCGGTTCCTACAGCGTTTCGGTGGACGACGACGCGATGGATCATTTCGCACAAGG
GTGCGGAGGAGACGTCCGCTCCGCTTTGAACGCACTGGAGCTTGCCGTGCTCTCCACAAAGGAATCAAGCGACGGCACGA
TCCGAATTATACGGGAAACGGCGGAAGAATGTCTGCAGAAAAAAAGCTATACCCATGATAAAAACGGCGATGCGCATTAT
GACGTCTTATCCGCGTTCCAAAAATCGATCCGGGGCTCGGACGCAAACGCCGCCCTTCATTATCTGGCCCGTCTGATCGA
AGCCGGAGACCTTGAAAGCATATCAAGAAGGCTTCTCGTGATCGCCTATGAAGATATCGGCCTCGCAAGCCCGCAGGCAG
GCCCCCGGGTGCTGAGCGCGATTCAGACCGCAGAACGGATCGGCTTTCCGGAAGCAAGAATTCCGCTGGCCAATGCGGTA
ATCGAATTATGCCTCTCGCCGAAATCAAACTCCGCCATTTCAGCCGTTGATGAGGCGCTCAAAGACATCAGGACGGGTAA
AATCGGCGATGTGCCGAAACATTTAAAAGACGCCCACTATAAAGGGGCCCAAGAGCTCGGACGCGGGATCGGCTATCAAT
ATCCCCACGATTTCGAGAACGGATGGGTCGAACAGCAATATTTGCCCGATCCGTTAAAAAACAAGCAATACTATAAACCG
AAACAAACGGGGAAATTTGAAGCCGCCATAAAGCAAGTGTATGAAAAACTGATGAAGCAGAAAAAATAA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	90.261	99.763	0.9