Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AS588_RS01030 Genome accession   NZ_CP014700
Coordinates   230232..232049 (+) Length   605 a.a.
NCBI ID   WP_003155527.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain S499     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 225232..237049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS588_RS01015 (AS588_01015) - 226017..226778 (+) 762 WP_007408530.1 MurR/RpiR family transcriptional regulator -
  AS588_RS01020 (AS588_01020) - 226795..228381 (+) 1587 WP_015388532.1 alpha-glucoside-specific PTS transporter subunit IIBC -
  AS588_RS01025 (AS588_01025) - 228519..230251 (+) 1733 Protein_201 ABC transporter ATP-binding protein -
  AS588_RS01030 (AS588_01030) rcrQ 230232..232049 (+) 1818 WP_003155527.1 ABC transporter ATP-binding protein Regulator
  AS588_RS01035 (AS588_01035) - 232216..232620 (+) 405 WP_014304646.1 DoxX family protein -
  AS588_RS01040 (AS588_01040) - 232637..233494 (+) 858 WP_014304647.1 VOC family protein -
  AS588_RS01045 (AS588_01045) cyoE 233873..234820 (+) 948 WP_003155524.1 heme o synthase -
  AS588_RS01050 (AS588_01050) - 234858..235409 (-) 552 WP_015388530.1 PadR family transcriptional regulator -
  AS588_RS01055 (AS588_01055) - 235643..236245 (+) 603 WP_003155520.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 67476.16 Da        Isoelectric Point: 9.4660

>NTDB_id=149082 AS588_RS01030 WP_003155527.1 230232..232049(+) (rcrQ) [Bacillus amyloliquefaciens strain S499]
MEKDIRKPFRYPKIPLKSNEGGRKRAKAKDTKGTLRRIWSYVAEKKGLLTLVIIMVVISAIFGLLGPFVIGKAIDHFIVG
RTTDGLAGVLFILFGIYLVQSLSLWFQNYWMINISQSTVFKMRSELFTHLHELPIPFFDKQRLGDLMSRVTNDIENVSST
LNTSVIQVLSSVITFVGTIAVMLYMSPLLTLITLLIIPIMLLSIKWITNRTGLLFKQQQKNLGELNGFIEESISGAKVIK
AYSREDRVMEQFLEKNAALQSSGFWAQTISGFIPKVMNSLNNLSFTIIAAVGGLFALKGWISIGSIVVFAEYSRQFTRPL
NDLANQFNTMLSAIAGAERVFDVLDEKEEREDEEHATHQPIKTGEIEFRDVSFGYQEDSPILKHLSFCVPKGQSIAFVGP
TGAGKTTVTSLIARFYEPNNGKILIDGTDIKKLTRSSLRKNMGFVLQDSFLFQGTIRENIRYGRLDASDQEVEAAAKAAN
AHGFIERLPKGYDTVLTQNGAGISQGQKQLISIARAVLADPVLLILDEATSNIDTVTEVKIQEALGRLMAGRTSVIIAHR
LNTIQKADQILVLKDGEMAEKGTHAELLSQNGFYRELYESQFRES

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=149082 AS588_RS01030 WP_003155527.1 230232..232049(+) (rcrQ) [Bacillus amyloliquefaciens strain S499]
GTGGAGAAAGACATTCGTAAACCTTTCCGATATCCGAAAATACCGCTCAAATCAAATGAAGGCGGCAGAAAACGCGCGAA
AGCAAAAGATACAAAAGGCACGCTGCGCAGAATCTGGTCGTATGTAGCCGAGAAAAAAGGGCTTTTAACCCTTGTGATCA
TCATGGTAGTCATAAGCGCCATATTCGGCCTGCTCGGACCGTTCGTCATCGGGAAAGCAATTGATCATTTTATCGTCGGA
CGGACGACGGACGGATTGGCGGGTGTACTGTTCATACTGTTTGGGATTTACCTCGTGCAATCATTGTCCTTATGGTTTCA
AAACTATTGGATGATCAATATCTCGCAAAGCACCGTGTTTAAAATGCGGAGCGAGCTGTTCACCCATCTGCATGAGCTGC
CGATACCGTTTTTTGATAAACAGCGCCTCGGCGATTTGATGAGCCGGGTTACCAATGATATCGAAAATGTCAGCTCCACT
TTAAATACATCCGTCATTCAAGTGCTGTCGAGCGTCATTACATTCGTCGGCACAATCGCCGTCATGCTGTACATGAGCCC
GCTTTTAACATTGATCACGCTTTTGATTATTCCGATCATGCTTTTGAGCATTAAATGGATCACCAACCGGACGGGACTCC
TGTTTAAGCAGCAGCAGAAAAACCTCGGCGAGCTGAACGGTTTTATTGAAGAGTCGATATCAGGAGCGAAGGTCATTAAA
GCCTATTCGAGGGAAGACCGCGTCATGGAGCAATTTTTAGAAAAAAACGCGGCGTTACAATCATCAGGGTTTTGGGCGCA
GACAATTTCGGGATTCATTCCGAAAGTCATGAACTCTTTAAACAATTTAAGCTTTACGATTATAGCGGCGGTCGGCGGGC
TGTTTGCGCTGAAGGGGTGGATTTCGATCGGTTCCATCGTCGTATTCGCAGAATACTCGCGGCAGTTCACGCGCCCTTTA
AATGATTTGGCGAACCAGTTCAATACGATGTTATCGGCCATCGCCGGGGCTGAGCGGGTGTTTGACGTGCTGGATGAAAA
AGAGGAGCGGGAAGATGAAGAGCATGCGACGCACCAGCCGATCAAAACGGGAGAGATTGAATTCCGAGATGTCTCCTTCG
GCTATCAGGAAGACAGCCCGATCTTAAAACATCTGTCCTTCTGCGTTCCGAAAGGACAGTCAATCGCCTTCGTCGGACCG
ACCGGAGCGGGTAAAACAACCGTTACGAGCCTGATCGCCCGTTTTTACGAGCCCAATAACGGAAAAATCCTCATTGACGG
AACGGACATCAAAAAACTGACGAGGTCCAGTCTGAGAAAAAACATGGGGTTTGTCCTGCAGGATTCCTTTCTCTTTCAGG
GCACCATCAGGGAAAATATCCGTTACGGCCGTCTGGATGCATCTGATCAAGAGGTGGAGGCAGCCGCAAAAGCCGCCAAT
GCCCACGGATTCATCGAACGGCTCCCGAAAGGCTACGATACCGTCCTTACCCAAAACGGCGCGGGCATCAGCCAAGGACA
AAAACAGCTTATTTCCATCGCGAGAGCTGTGCTGGCGGACCCGGTGCTGCTCATTTTGGATGAAGCGACGAGCAACATTG
ATACGGTGACGGAAGTGAAAATACAAGAAGCGCTCGGCCGTTTAATGGCGGGCAGAACAAGCGTCATCATCGCTCACAGG
CTGAACACGATTCAAAAAGCCGATCAGATTCTTGTGCTGAAAGACGGCGAAATGGCTGAAAAAGGAACCCATGCTGAACT
GCTCAGCCAGAACGGGTTTTACCGGGAATTATATGAAAGCCAGTTCCGGGAATCATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(49-320)

ABC transporter (ABC_tran)

(382-531)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.593

96.364

0.372