Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FORC16_RS00630 Genome accession   NZ_CP011775
Coordinates   131313..132023 (-) Length   236 a.a.
NCBI ID   WP_060532755.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_016     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 126313..137023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC16_RS00600 (FORC16_0104) gspL 126498..127697 (+) 1200 WP_043920924.1 type II secretion system protein GspL -
  FORC16_RS00605 (FORC16_0105) - 127705..128196 (+) 492 WP_011078935.1 type II secretion system protein M -
  FORC16_RS00610 (FORC16_0106) - 128198..128959 (+) 762 WP_060532757.1 type II secretion system protein N -
  FORC16_RS00615 (FORC16_0107) cysQ 129086..129913 (-) 828 WP_045623813.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FORC16_RS00620 (FORC16_0108) nudE 129928..130482 (-) 555 WP_013572571.1 ADP compounds hydrolase NudE -
  FORC16_RS00625 (FORC16_0109) nfuA 130598..131182 (-) 585 WP_026050270.1 Fe-S biogenesis protein NfuA -
  FORC16_RS00630 comF 131313..132023 (-) 711 WP_060532755.1 ComF family protein Machinery gene
  FORC16_RS00635 (FORC16_0111) bioH 132112..132879 (+) 768 WP_060532754.1 pimeloyl-ACP methyl ester esterase BioH -
  FORC16_RS00640 (FORC16_0112) - 133017..133487 (+) 471 WP_011078928.1 hypothetical protein -
  FORC16_RS00645 (FORC16_0113) - 133570..135894 (-) 2325 WP_060532752.1 Tex family protein -
  FORC16_RS00650 (FORC16_0114) greB 136130..136612 (+) 483 WP_013572566.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27226.96 Da        Isoelectric Point: 9.9832

>NTDB_id=148609 FORC16_RS00630 WP_060532755.1 131313..132023(-) (comF) [Vibrio vulnificus strain FORC_016]
MLTDWLSEKILRSLPRLCHLCGLPMNHDHHPLWCKHCLTLFDAEPRCQRCGLPTLTVVPQCGQCLKSPPPWQKLYCLTPY
RFPASHYVNQIKHQRKFWYCASLAPLLIQRIDRPASLLLSVPMHWRRQWQRGFNQSDVLAAQLARRLNRPFLAHAFTRLL
HTPPQQGLNKQQRQRNLAGAFRLNRSALPHAIPKHVAIVDDVVTTGSTVRQLCQLLLAVGVESIDIYCLCRTPEKD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=148609 FORC16_RS00630 WP_060532755.1 131313..132023(-) (comF) [Vibrio vulnificus strain FORC_016]
ATGTTAACCGATTGGCTTAGTGAAAAAATACTCCGATCTCTTCCTCGCCTCTGTCATCTGTGCGGCTTGCCGATGAATCA
CGACCATCACCCGCTTTGGTGCAAGCACTGCCTAACCCTGTTCGATGCCGAACCGCGTTGCCAACGTTGCGGGCTGCCGA
CGTTAACGGTTGTCCCCCAGTGCGGCCAATGTCTGAAATCTCCGCCCCCTTGGCAAAAGCTCTACTGCCTCACGCCGTAT
CGCTTCCCGGCCTCACACTACGTCAATCAGATCAAACATCAGCGCAAATTCTGGTACTGCGCCAGCTTGGCACCTTTGCT
CATCCAACGCATTGACCGCCCCGCGTCACTGCTGCTCTCTGTGCCGATGCATTGGCGTCGGCAATGGCAGCGAGGCTTCA
ATCAAAGCGATGTGTTGGCGGCGCAACTGGCGAGGAGATTAAATCGCCCCTTCCTTGCCCACGCTTTTACTCGTTTGTTG
CACACTCCGCCACAGCAAGGGCTCAATAAACAGCAGCGTCAGCGCAACTTAGCGGGTGCTTTTCGCCTCAATCGCTCGGC
TCTGCCCCATGCGATTCCCAAGCATGTCGCGATTGTCGATGATGTGGTCACGACGGGTAGTACGGTACGACAATTATGTC
AATTACTGCTTGCAGTCGGCGTGGAAAGCATTGATATTTATTGCCTCTGCCGAACTCCCGAGAAGGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.838

99.153

0.564
  comF Vibrio campbellii strain DS40M4

45.833

100

0.466

Multiple sequence alignment