Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   ASU2_RS06175 Genome accession   NC_018690
Coordinates   1351145..1351549 (-) Length   134 a.a.
NCBI ID   WP_014991935.1    Uniprot ID   A0ABT1WV79
Organism   Actinobacillus suis H91-0380     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1346145..1356549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASU2_RS06150 (ASU2_06095) - 1347150..1347776 (-) 627 WP_014991930.1 LysE family transporter -
  ASU2_RS06155 (ASU2_06100) - 1347785..1348258 (-) 474 WP_014991931.1 phosphatidylglycerophosphatase A family protein -
  ASU2_RS06160 (ASU2_06105) thiL 1348271..1349236 (-) 966 WP_014991932.1 thiamine-phosphate kinase -
  ASU2_RS06165 (ASU2_06110) nusB 1349301..1349714 (-) 414 WP_014991933.1 transcription antitermination factor NusB -
  ASU2_RS06170 (ASU2_06115) comE 1349840..1351135 (-) 1296 WP_014991934.1 type IV pilus secretin PilQ Machinery gene
  ASU2_RS06175 (ASU2_06120) comD 1351145..1351549 (-) 405 WP_014991935.1 hypothetical protein Machinery gene
  ASU2_RS06180 (ASU2_06125) comC 1351542..1352069 (-) 528 WP_014991936.1 hypothetical protein Machinery gene
  ASU2_RS06185 (ASU2_06130) comB 1352072..1352593 (-) 522 WP_014991937.1 hypothetical protein Machinery gene
  ASU2_RS06190 (ASU2_06135) comA 1352575..1353261 (-) 687 WP_014991938.1 hypothetical protein Machinery gene
  ASU2_RS06195 (ASU2_06140) - 1353400..1355985 (+) 2586 WP_014991939.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15544.88 Da        Isoelectric Point: 4.8722

>NTDB_id=1464 ASU2_RS06175 WP_014991935.1 1351145..1351549(-) (comD) [Actinobacillus suis H91-0380]
MSKYILILLFFSSISSADPFYGEKLDDENSTFSPESEIAINTENLTACNLPSQRNSRYLPAKLAQLKFIGVLKKQDKYKA
IFMDTQKQLFDLQVNDWLDNELIQIVDIDLKSISYIHWQTEKNCQFPTLITLKL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=1464 ASU2_RS06175 WP_014991935.1 1351145..1351549(-) (comD) [Actinobacillus suis H91-0380]
ATGAGTAAATATATTTTGATTTTATTATTTTTCTCATCAATAAGTAGTGCAGACCCGTTTTATGGAGAGAAATTAGACGA
TGAAAATAGTACATTTTCTCCTGAATCAGAGATTGCAATAAATACAGAAAATTTAACCGCTTGTAACTTACCGTCACAAC
GAAATTCCCGCTATTTGCCGGCAAAATTGGCACAGCTAAAATTTATCGGAGTACTGAAAAAACAGGATAAATATAAAGCG
ATTTTTATGGATACGCAAAAGCAACTGTTTGATCTACAAGTGAATGATTGGCTAGATAATGAGTTGATTCAGATCGTAGA
TATTGATTTAAAATCAATTAGTTATATACATTGGCAAACAGAGAAAAATTGTCAATTTCCGACTTTAATTACCTTAAAGT
TATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value