Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | AA976_RS00360 | Genome accession | NZ_CP011484 |
| Coordinates | 66695..66958 (+) | Length | 87 a.a. |
| NCBI ID | WP_000584973.1 | Uniprot ID | G2MDJ4 |
| Organism | Helicobacter pylori strain CC33C | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 61695..71958
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AA976_RS00335 (AA976_00345) | groES | 61988..62344 (-) | 357 | WP_064436155.1 | co-chaperone GroES | - |
| AA976_RS00340 (AA976_00350) | dnaG | 62622..64301 (+) | 1680 | WP_064436156.1 | DNA primase | - |
| AA976_RS00345 (AA976_00355) | - | 64298..65350 (+) | 1053 | WP_000809458.1 | MnmA/TRMU family protein | - |
| AA976_RS00350 (AA976_00360) | - | 65441..66268 (+) | 828 | WP_001154933.1 | DUF5718 family protein | - |
| AA976_RS00355 (AA976_00365) | comB2 | 66414..66695 (+) | 282 | WP_001272686.1 | TrbC/VirB2 family protein | Machinery gene |
| AA976_RS00360 (AA976_00370) | comB3 | 66695..66958 (+) | 264 | WP_000584973.1 | hypothetical protein | Machinery gene |
| AA976_RS00365 (AA976_00375) | comB4 | 66960..69323 (+) | 2364 | WP_064436157.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| AA976_RS00375 (AA976_00380) | - | 69628..70968 (+) | 1341 | WP_001876830.1 | COG3014 family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10034.13 Da Isoelectric Point: 9.5290
>NTDB_id=146229 AA976_RS00360 WP_000584973.1 66695..66958(+) (comB3) [Helicobacter pylori strain CC33C]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=146229 AA976_RS00360 WP_000584973.1 66695..66958(+) (comB3) [Helicobacter pylori strain CC33C]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAAACT
AAAACCAAATGTTATAGAGCGTAG
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAAACT
AAAACCAAATGTTATAGAGCGTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
98.851 |
100 |
0.989 |