Detailed information
Bioinformatically predicted
Overview
| Name | comB2 | Type | Machinery gene |
| Locus tag | EE66_RS07565 | Genome accession | NZ_CP011483 |
| Coordinates | 1543733..1544014 (+) | Length | 93 a.a. |
| NCBI ID | WP_001272686.1 | Uniprot ID | G2MDJ3 |
| Organism | Helicobacter pylori strain DU15 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1538733..1549014
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EE66_RS07545 (EE66_07555) | groES | 1539311..1539667 (-) | 357 | WP_064431522.1 | co-chaperone GroES | - |
| EE66_RS07550 (EE66_07560) | dnaG | 1539942..1541621 (+) | 1680 | WP_064431523.1 | DNA primase | - |
| EE66_RS07555 (EE66_07565) | - | 1541618..1542670 (+) | 1053 | WP_021301516.1 | MnmA/TRMU family protein | - |
| EE66_RS07560 (EE66_07570) | - | 1542761..1543588 (+) | 828 | WP_064431524.1 | DUF5718 family protein | - |
| EE66_RS07565 (EE66_07575) | comB2 | 1543733..1544014 (+) | 282 | WP_001272686.1 | TrbC/VirB2 family protein | Machinery gene |
| EE66_RS07570 (EE66_07580) | comB3 | 1544014..1544277 (+) | 264 | WP_000584955.1 | hypothetical protein | Machinery gene |
| EE66_RS07575 (EE66_07585) | comB4 | 1544280..1546643 (+) | 2364 | WP_064431525.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| EE66_RS07585 (EE66_07590) | - | 1546874..1548304 (+) | 1431 | WP_172795863.1 | COG3014 family protein | - |
Sequence
Protein
Download Length: 93 a.a. Molecular weight: 10539.81 Da Isoelectric Point: 9.1450
>NTDB_id=146223 EE66_RS07565 WP_001272686.1 1543733..1544014(+) (comB2) [Helicobacter pylori strain DU15]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF
Nucleotide
Download Length: 282 bp
>NTDB_id=146223 EE66_RS07565 WP_001272686.1 1543733..1544014(+) (comB2) [Helicobacter pylori strain DU15]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGATTAGAAGGGTT
TTTTAATGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCCAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTTTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGATTAGAAGGGTT
TTTTAATGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCCAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTTTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB2 | Helicobacter pylori 26695 |
98.925 |
100 |
0.989 |