Detailed information
Bioinformatically predicted
Overview
| Name | recR | Type | Machinery gene |
| Locus tag | SY84_RS13550 | Genome accession | NZ_CP011389 |
| Coordinates | 2791291..2791899 (-) | Length | 202 a.a. |
| NCBI ID | WP_046844452.1 | Uniprot ID | A0A0F7JT87 |
| Organism | Deinococcus soli (ex Cha et al. 2016) strain N5 | ||
| Function | promote later steps in plasmid transformation (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2786291..2796899
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SY84_RS13530 (SY84_13535) | - | 2787433..2788614 (+) | 1182 | WP_046844449.1 | glycosyltransferase | - |
| SY84_RS13535 (SY84_13540) | - | 2788574..2789248 (-) | 675 | WP_046844450.1 | glycosyltransferase | - |
| SY84_RS13540 (SY84_13545) | - | 2789299..2790531 (+) | 1233 | WP_157882997.1 | MFS transporter | - |
| SY84_RS13545 (SY84_13550) | - | 2790528..2791232 (+) | 705 | WP_046844451.1 | polysaccharide deacetylase family protein | - |
| SY84_RS13550 (SY84_13555) | recR | 2791291..2791899 (-) | 609 | WP_046844452.1 | recombination mediator RecR | Machinery gene |
| SY84_RS13555 (SY84_13560) | - | 2792024..2792314 (-) | 291 | WP_046844453.1 | YbaB/EbfC family nucleoid-associated protein | - |
| SY84_RS13560 (SY84_13565) | - | 2792459..2792944 (-) | 486 | WP_046844454.1 | peroxiredoxin | - |
| SY84_RS13565 (SY84_13570) | - | 2793087..2793764 (-) | 678 | WP_046844455.1 | NUDIX hydrolase | - |
| SY84_RS13570 (SY84_13575) | - | 2793890..2795893 (-) | 2004 | WP_046845245.1 | amylo-alpha-1,6-glucosidase | - |
| SY84_RS13575 (SY84_13580) | infC | 2796015..2796644 (+) | 630 | WP_046845246.1 | translation initiation factor IF-3 | - |
Sequence
Protein
Download Length: 202 a.a. Molecular weight: 22026.34 Da Isoelectric Point: 6.3353
>NTDB_id=145415 SY84_RS13550 WP_046844452.1 2791291..2791899(-) (recR) [Deinococcus soli (ex Cha et al. 2016) strain N5]
MKYPPSLVALIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLSRALLEAKRDLHTCPVCFNITDAERCDVCSDPSRDQG
VICVVEEPGDVIAIERSGEYRGLYHVLHGVLSPMNGVGPDKLHIRPLLPRVQEGQEVILATGTTVEGDATALYLQRLLEP
LGAVVSRIAYGLPVGGALEYADEVTLGRALAGRQRVSKPQGS
MKYPPSLVALIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLSRALLEAKRDLHTCPVCFNITDAERCDVCSDPSRDQG
VICVVEEPGDVIAIERSGEYRGLYHVLHGVLSPMNGVGPDKLHIRPLLPRVQEGQEVILATGTTVEGDATALYLQRLLEP
LGAVVSRIAYGLPVGGALEYADEVTLGRALAGRQRVSKPQGS
Nucleotide
Download Length: 609 bp
>NTDB_id=145415 SY84_RS13550 WP_046844452.1 2791291..2791899(-) (recR) [Deinococcus soli (ex Cha et al. 2016) strain N5]
GTGAAGTACCCTCCGTCATTGGTGGCGCTCATCCGTGAGCTGTCGCGCCTGCCCGGCATCGGGCCGAAGAGCGCGCAGCG
GCTGGCGTTCCACCTGTTCGAGCAGCCCCGCGAAGACATCGAGCGCCTGTCGCGGGCGCTGCTGGAAGCCAAGCGTGACC
TGCACACCTGCCCGGTGTGTTTCAACATCACGGACGCCGAGCGCTGCGACGTGTGCAGCGACCCCAGCCGCGACCAGGGC
GTGATCTGCGTCGTGGAGGAACCCGGTGACGTGATCGCCATCGAGCGCAGCGGCGAGTACCGCGGCCTGTACCACGTGCT
GCACGGCGTCCTGAGTCCCATGAACGGCGTCGGGCCGGACAAGCTGCATATCCGCCCGCTGCTGCCACGCGTGCAGGAGG
GGCAGGAGGTCATCCTGGCAACCGGCACGACCGTCGAGGGTGACGCGACCGCGCTGTACCTCCAGCGGCTGCTCGAACCC
CTGGGTGCGGTCGTGAGCCGCATCGCGTACGGCCTGCCGGTGGGCGGCGCGCTGGAGTACGCGGACGAGGTAACGCTGGG
CCGCGCGCTGGCCGGACGACAGCGCGTCAGCAAACCGCAGGGGAGCTGA
GTGAAGTACCCTCCGTCATTGGTGGCGCTCATCCGTGAGCTGTCGCGCCTGCCCGGCATCGGGCCGAAGAGCGCGCAGCG
GCTGGCGTTCCACCTGTTCGAGCAGCCCCGCGAAGACATCGAGCGCCTGTCGCGGGCGCTGCTGGAAGCCAAGCGTGACC
TGCACACCTGCCCGGTGTGTTTCAACATCACGGACGCCGAGCGCTGCGACGTGTGCAGCGACCCCAGCCGCGACCAGGGC
GTGATCTGCGTCGTGGAGGAACCCGGTGACGTGATCGCCATCGAGCGCAGCGGCGAGTACCGCGGCCTGTACCACGTGCT
GCACGGCGTCCTGAGTCCCATGAACGGCGTCGGGCCGGACAAGCTGCATATCCGCCCGCTGCTGCCACGCGTGCAGGAGG
GGCAGGAGGTCATCCTGGCAACCGGCACGACCGTCGAGGGTGACGCGACCGCGCTGTACCTCCAGCGGCTGCTCGAACCC
CTGGGTGCGGTCGTGAGCCGCATCGCGTACGGCCTGCCGGTGGGCGGCGCGCTGGAGTACGCGGACGAGGTAACGCTGGG
CCGCGCGCTGGCCGGACGACAGCGCGTCAGCAAACCGCAGGGGAGCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recR | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
89.5 |
99.01 |
0.886 |