Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   SY84_RS05360 Genome accession   NZ_CP011389
Coordinates   1091245..1091889 (-) Length   214 a.a.
NCBI ID   WP_046843152.1    Uniprot ID   A0A0F7JLR9
Organism   Deinococcus soli (ex Cha et al. 2016) strain N5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1086245..1096889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SY84_RS05335 (SY84_05340) - 1088345..1089346 (+) 1002 WP_046843148.1 putative Ig domain-containing protein -
  SY84_RS05340 (SY84_05345) - 1089343..1089798 (+) 456 WP_046843149.1 hypothetical protein -
  SY84_RS05345 (SY84_05350) - 1089798..1090322 (+) 525 WP_046844963.1 hypothetical protein -
  SY84_RS05350 (SY84_05355) - 1090437..1090652 (+) 216 WP_046843150.1 RNA-binding S4 domain-containing protein -
  SY84_RS05355 (SY84_05360) - 1090654..1091199 (+) 546 WP_046843151.1 DUF1684 domain-containing protein -
  SY84_RS05360 (SY84_05365) comF 1091245..1091889 (-) 645 WP_046843152.1 ComF family protein Machinery gene
  SY84_RS05365 (SY84_05370) - 1092093..1092611 (-) 519 WP_308420058.1 hypothetical protein -
  SY84_RS05370 (SY84_05375) - 1092786..1093064 (+) 279 WP_046843153.1 hypothetical protein -
  SY84_RS05375 (SY84_05380) - 1093125..1093784 (-) 660 WP_046843154.1 hypothetical protein -
  SY84_RS05380 (SY84_05385) gatB 1093781..1095217 (-) 1437 WP_046843155.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  SY84_RS05385 (SY84_05390) - 1095279..1096052 (-) 774 WP_052751046.1 M15 family metallopeptidase -
  SY84_RS05390 (SY84_05395) - 1096320..1096637 (+) 318 WP_046843156.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 22524.07 Da        Isoelectric Point: 11.1188

>NTDB_id=145403 SY84_RS05360 WP_046843152.1 1091245..1091889(-) (comF) [Deinococcus soli (ex Cha et al. 2016) strain N5]
MTAAFGTALLGALRTLLPRACPGCGAQLGAHAGLCPACRAALRPHVQAHSPLRAQPEPHLVTLGTYSGVRRRAVRELKFA
HARDLARILGEALATGVPADWNVQAVIPVPLHPGRQRQRGFNQAELLGRALASALAVPCVPALIRTHAGAQQARRHAAQR
EDLHGAFRAHEGFLPGGPVLLIDDVLTTGHTAQACQDALKQAGAPQVYVAVVAR

Nucleotide


Download         Length: 645 bp        

>NTDB_id=145403 SY84_RS05360 WP_046843152.1 1091245..1091889(-) (comF) [Deinococcus soli (ex Cha et al. 2016) strain N5]
ATGACCGCTGCGTTCGGAACGGCCCTGCTCGGCGCGCTGCGCACCCTGCTGCCCCGCGCCTGCCCCGGCTGCGGCGCGCA
GCTCGGGGCGCACGCCGGACTGTGCCCCGCCTGCCGCGCCGCCCTGCGCCCCCATGTGCAGGCCCACAGCCCCCTGCGCG
CCCAGCCGGAACCGCACCTCGTGACGCTCGGGACGTACAGCGGCGTGCGCCGACGCGCCGTGCGGGAACTGAAGTTCGCC
CACGCCCGCGACCTCGCCCGCATCCTCGGCGAGGCGCTCGCCACGGGCGTGCCCGCCGACTGGAACGTGCAGGCTGTCAT
TCCCGTCCCGCTGCACCCCGGGCGGCAGCGTCAGCGCGGCTTCAATCAGGCCGAGCTGCTGGGCCGCGCCCTGGCCAGCG
CCCTGGCCGTCCCCTGCGTTCCCGCCCTGATCCGCACCCACGCTGGCGCCCAGCAGGCCCGGCGGCACGCCGCGCAGCGC
GAGGACCTGCACGGCGCCTTCCGCGCGCACGAGGGCTTCCTGCCCGGTGGCCCGGTGCTCCTCATTGACGACGTGCTCAC
CACCGGGCACACCGCGCAGGCCTGCCAGGACGCCCTGAAACAGGCGGGCGCGCCGCAGGTGTACGTGGCGGTCGTCGCCC
GCTGA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(13-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F7JLR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.319

96.729

0.603

Multiple sequence alignment