Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SU48_RS10200 Genome accession   NZ_CP011387
Coordinates   2240760..2241356 (-) Length   198 a.a.
NCBI ID   WP_064015164.1    Uniprot ID   A0A172TAX3
Organism   Deinococcus puniceus strain DY1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2235760..2246356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SU48_RS10165 (SU48_10180) - 2236009..2236680 (+) 672 WP_064015160.1 LrgB family protein -
  SU48_RS10170 (SU48_10185) - 2236913..2237617 (-) 705 WP_064015987.1 metallophosphoesterase -
  SU48_RS10180 (SU48_10195) - 2238039..2238629 (-) 591 WP_231881597.1 RecX family transcriptional regulator -
  SU48_RS10185 (SU48_10200) rpsT 2238860..2239141 (+) 282 WP_064015161.1 30S ribosomal protein S20 -
  SU48_RS10190 (SU48_10205) - 2239341..2239805 (-) 465 WP_064015162.1 hypothetical protein -
  SU48_RS10195 (SU48_10210) - 2239874..2240497 (-) 624 WP_064015163.1 GNAT family N-acetyltransferase -
  SU48_RS10200 (SU48_10215) recR 2240760..2241356 (-) 597 WP_064015164.1 recombination mediator RecR Machinery gene
  SU48_RS10205 (SU48_10220) - 2241388..2241678 (-) 291 WP_064015165.1 YbaB/EbfC family nucleoid-associated protein -
  SU48_RS10210 (SU48_10225) - 2241888..2243066 (+) 1179 WP_064015166.1 acetyl-CoA C-acetyltransferase -
  SU48_RS10215 (SU48_10230) - 2243092..2243406 (+) 315 WP_064015167.1 YciI family protein -
  SU48_RS10220 (SU48_10235) - 2243537..2244373 (+) 837 WP_064015168.1 3-hydroxyacyl-CoA dehydrogenase family protein -
  SU48_RS10225 (SU48_10240) - 2244453..2245292 (+) 840 WP_064015169.1 hypothetical protein -
  SU48_RS10230 (SU48_10245) - 2245540..2246136 (-) 597 WP_082869742.1 peroxidase-related enzyme -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21601.98 Da        Isoelectric Point: 6.3349

>NTDB_id=145370 SU48_RS10200 WP_064015164.1 2240760..2241356(-) (recR) [Deinococcus puniceus strain DY1]
MKYPPSLVALIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLAGSLLAAKRDLHVCPICFNITDADRCDVCSDPNRDQN
LIAVVEEPGDVIAIERSGEYRGLYHVLHGVLSPMNGVGPDKLHIRPLLPRVTEGMEVILATGTTVEGDATALYLQRLLEP
LGALVSRIAYGLPVGGALEYADEVTLGRAMTGRQRVSK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=145370 SU48_RS10200 WP_064015164.1 2240760..2241356(-) (recR) [Deinococcus puniceus strain DY1]
ATGAAGTATCCGCCGTCCCTCGTGGCCCTGATCCGCGAGCTGTCGCGCTTGCCGGGCATCGGCCCCAAGAGCGCCCAGCG
GCTTGCTTTCCACCTGTTCGAGCAACCCCGCGAAGACATAGAGCGGCTGGCCGGGTCGCTGCTGGCCGCCAAGCGTGACC
TGCACGTGTGCCCGATCTGCTTCAACATTACCGACGCAGACCGCTGTGACGTGTGCAGTGACCCCAACCGAGACCAGAAT
CTGATCGCGGTAGTAGAGGAACCCGGCGACGTGATCGCCATTGAGCGCAGCGGCGAATACCGGGGGCTGTATCACGTGCT
GCACGGCGTTCTGAGTCCTATGAACGGCGTCGGCCCCGACAAGCTGCACATTCGGCCCCTGCTGCCGCGTGTGACGGAAG
GCATGGAAGTCATTCTGGCCACCGGAACCACCGTGGAAGGCGACGCCACGGCGCTGTATTTGCAGCGGTTGCTGGAGCCG
TTGGGGGCATTGGTGAGCCGCATCGCCTACGGATTGCCGGTGGGCGGCGCGCTGGAATACGCCGACGAAGTGACGCTAGG
CCGGGCCATGACGGGGCGGCAGCGGGTGAGTAAGTAG

Domains

Predicted by InterproScan.

Toprim domain (Toprim_4)

(82-169)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172TAX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

88.889

100

0.889

Multiple sequence alignment