Detailed information NTG0145351

Bioinformatically predicted

Overview

• Name: pilB
• Type: Machinery gene
• Locus tag: SU48_RS00005
• Genome accession: NZ_CP011387
• Coordinates: 2971356..2042 (+)
• Length: 890 a.a.
• NCBI ID: WP_064015741.1
• Uniprot ID: A0A172TC70
• Organism: Deinococcus puniceus strain DY1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2966356..7042

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
-	pilB	2971356..2042 (+)	-2969313	-	-	Machinery gene

Sequence

Protein

• Length: 890 a.a.
• Molecular weight: 96703.85 Da
• Isoelectric Point: 4.8174

>NTDB_id=145351 SU48_RS00005 WP_064015741.1 2971356..2042(+) (pilB) [Deinococcus puniceus strain DY1]
MALSIGDRRLGAILLEQGYVNDTDLQRALVRHAEIGGRLADILIDTGLVGEKRIARAIEEALGIPLVNLLVVTPEEAALK
SVQAQTALASQAFPFAIDGGTLRVALVDPLSSMALEALEDDSGLMIEPYQALRDQIMWAMATHYPELGITPALPDEIGEG
GGSMLGQRLMGRGLINDAQLQVALDVQQQTGEALGGTLIAQQIITEDQLYESLAEQTGTVYLRNPRDFQPTEDVLGSMLR
ADALRLNAVPVDESDQGVTVVASDPRKREDIEALVGRTVTLILAKPKDVETLIERFYPQRGRLGEQMVQQGSLSRAQLRE
ALHVQAREGKVKPLGEVIMELGFAGADEIDVALQKQNAGGGRLEDTLVQSGKLSPEMLARSLAAQLGYEFLDPVQNPPDS
KVALMIPEGTARRYGVVPVRLQGESLVVAMKDPRNVFALDDLKLITGRDIIPAVMAEKDIIRLIERYFGNKDMANLNQEL
ANLSSKRDSKKQEEMDLSVGLDDNAVVRVVDNLIREAALQEASDIHIEPTETGLRIRYRVDGVLREQNELPKGSSQSILA
RIKIMGNLDISERRVPQDGRVRFKKGSIDIDLRLSTLPTVYGEKAVMRLLQKAANIPEVENLGFSDYNFPRFLDLIEKPY
GIFLVTGPTGSGKSFTSFSTLKRIARPEKNTTTIEDPVEYEIPGIVQSQVNPVAGMTFARALRAFLRQDPDIIFVGEIRD
SETAKIAVEAALTGHMVLATLHTNDAPGAVTRLDEMGVEGFNIGASLIGVLGQRLVRKVCPDCKAPTNADPDVLRRLGIS
ERDLRGGALVRGAGCPRCGGTGYKGRTGLHELMVLDDALRTAIGSGKPAVELREVAMNESGMRTMRQDGIDKALKGITTL
EEVLAVTSN

Nucleotide

• Length: 0 bp

>NTDB_id=145351 SU48_RS00005 WP_064015741.1 2971356..2042(+) (pilB) [Deinococcus puniceus strain DY1]

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (43-146)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (198-301)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (367-471)

• Type II/IV secretion system protein (T2SSE) (513-778)

3D structure

• AlphaFold DB: A0A172TC70

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilB	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	76.319	100	0.765
pilF	Thermus thermophilus HB27	54.86	100	0.552