Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   CD56_RS04965 Genome accession   NZ_CP011372
Coordinates   940304..941032 (-) Length   242 a.a.
NCBI ID   WP_047208377.1    Uniprot ID   -
Organism   Campylobacter lari strain Slaughter Beach     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 935304..946032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD56_RS04925 (CD56_04910) holA 935972..936937 (+) 966 WP_039641691.1 DNA polymerase III subunit delta -
  CD56_RS04930 (CD56_04915) rpsF 937028..937402 (+) 375 WP_012661658.1 30S ribosomal protein S6 -
  CD56_RS04935 (CD56_04920) - 937406..937933 (+) 528 WP_047208374.1 single-stranded DNA-binding protein -
  CD56_RS04940 (CD56_04925) rpsR 937945..938205 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  CD56_RS04945 (CD56_04930) - 938257..938898 (+) 642 WP_047208375.1 MarC family protein -
  CD56_RS04950 (CD56_04935) - 938880..939302 (-) 423 WP_039619645.1 hypothetical protein -
  CD56_RS04955 (CD56_04940) - 939299..940027 (-) 729 WP_047208376.1 type II secretion system protein -
  CD56_RS04960 (CD56_04945) - 940011..940307 (-) 297 WP_039618527.1 hypothetical protein -
  CD56_RS04965 (CD56_04950) proC 940304..941032 (-) 729 WP_047208377.1 pyrroline-5-carboxylate reductase Machinery gene
  CD56_RS04970 (CD56_04955) fliW 941032..941427 (-) 396 WP_012661666.1 flagellar assembly protein FliW -
  CD56_RS04975 (CD56_04960) bamD 941604..942260 (+) 657 WP_039618532.1 outer membrane protein assembly factor BamD -
  CD56_RS04980 (CD56_04965) lon 942260..944638 (+) 2379 WP_047208378.1 endopeptidase La -
  CD56_RS08485 (CD56_04970) - 944653..946026 (-) 1374 WP_407712411.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26591.76 Da        Isoelectric Point: 6.7094

>NTDB_id=145203 CD56_RS04965 WP_047208377.1 940304..941032(-) (proC) [Campylobacter lari strain Slaughter Beach]
MSEIYILGNGAMASAIAKGLKDTYKVVIVARDLKKASSLNLEVLSYEEFDLEDKNVILAFKPYALEEVAVKLKGKARWLI
SVLANTTFEQLHCVNAQNYIKIMPNTAAEFKASATAYLMENDSYKDEILSLLNTFGKAISLQNEKEFDVAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYELTRACFESFSALFNHTHPAIIKEKICSPAGVTIRGVETLEKRALRGTFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=145203 CD56_RS04965 WP_047208377.1 940304..941032(-) (proC) [Campylobacter lari strain Slaughter Beach]
ATGTCTGAAATTTATATTTTAGGAAATGGTGCTATGGCAAGTGCTATAGCTAAAGGTTTAAAAGATACTTATAAAGTAGT
TATTGTTGCTAGGGATTTAAAAAAAGCTAGTAGTTTAAATTTAGAAGTTTTATCTTATGAAGAATTTGATTTAGAAGATA
AAAATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAGAAGTAGCTGTTAAATTAAAAGGCAAGGCAAGATGGCTTATT
TCAGTTTTAGCAAATACTACTTTTGAGCAACTTCATTGTGTTAATGCGCAAAATTATATAAAAATCATGCCAAATACAGC
AGCTGAATTTAAAGCCTCAGCGACTGCGTATTTGATGGAAAATGATTCATATAAAGATGAAATTTTATCTTTGTTAAATA
CTTTTGGTAAAGCCATAAGTTTGCAAAATGAAAAAGAATTTGATGTGGCTATGGTTTTAAGTGGCTGTGCTCCTGCGTTT
TTGGCTTTGGTAGCAGAAAGTTTAGCAAATGCAGGTGTTAAAAATGGTTTAAAAAATGAGCTTAGCTATGAGCTTACTCG
CGCTTGTTTTGAAAGCTTTAGTGCTTTGTTTAACCATACACATCCTGCTATTATCAAAGAAAAAATTTGTTCTCCAGCAG
GGGTAACTATAAGAGGAGTTGAGACTTTAGAAAAAAGAGCTTTGCGCGGTACTTTTTTTGAAGCTTTTAATGCAAGTTTA
AACAAATGA

Domains

Predicted by InterproScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

58.577

98.76

0.579

Multiple sequence alignment