Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   AAV35_RS05195 Genome accession   NZ_CP011361
Coordinates   1046028..1048328 (+) Length   766 a.a.
NCBI ID   WP_008588677.1    Uniprot ID   K2H964
Organism   Salimicrobium jeotgali strain MJ3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1041028..1053328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAV35_RS05175 (AAV35_005125) tgt 1041109..1042245 (+) 1137 WP_008588672.1 tRNA guanosine(34) transglycosylase Tgt -
  AAV35_RS05180 (AAV35_005130) yajC 1042261..1042521 (+) 261 WP_008588673.1 preprotein translocase subunit YajC -
  AAV35_RS05185 (AAV35_005135) secDF 1042977..1045262 (+) 2286 WP_008588674.1 protein translocase subunit SecDF -
  AAV35_RS05190 (AAV35_005140) - 1045640..1045972 (+) 333 WP_008588675.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  AAV35_RS05195 (AAV35_005145) recJ 1046028..1048328 (+) 2301 WP_008588677.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  AAV35_RS05200 (AAV35_005150) - 1048318..1048833 (+) 516 WP_008588678.1 adenine phosphoribosyltransferase -
  AAV35_RS05205 (AAV35_005155) - 1048950..1051151 (+) 2202 WP_008588679.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  AAV35_RS05210 (AAV35_005160) dtd 1051164..1051610 (+) 447 WP_008588680.1 D-aminoacyl-tRNA deacylase -
  AAV35_RS05215 (AAV35_005165) hisS 1051983..1053257 (+) 1275 WP_008588682.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 766 a.a.        Molecular weight: 86735.85 Da        Isoelectric Point: 4.8961

>NTDB_id=145066 AAV35_RS05195 WP_008588677.1 1046028..1048328(+) (recJ) [Salimicrobium jeotgali strain MJ3]
MLKSKMKWDFTYSSDSANRQELINELLEQRGLHTEEERNRFLHPALADLHDPFLINGMRKAVNRVKEAIHYGEPILIFGD
YDADGVSSTALMMECLRSLGAECDFYIPNRFTEGYGPNENAFRWASAQGYTLIITVDNGIAAVEEAKVAKELGIDLIITD
HHEVQNELPEAFAILHPKTSLQYPFQELAGVGVAFKFAHALLEEKPVHLLDLVAIGTVADLVPLEDENRILVSFGLEAIT
KTKRPGLRQLKNLNSIDGDVDEEAVGFMIGPRMNAVGRLQDASPAVDLLLTRDEEEAQELAGFVQELNKERQKIVQEIAD
EAETLLGEDVQDEVIVVAREGWNAGVLGIVASKLVRKFDRPAIVLTIDKEKGQAKGSARSIDAYDMFENCMEHRDLFLHF
GGHSQAAGMTLTEDNIVPLREELSRLAREKLAPEDYRQSLPVTMSLDLSEVSLQQIEFVNQLRPFGMANPKPYFHVRSKA
KELRLIGSKKNHMKVTLEQNGSRLDAIAFGQGDAYHSIAPQSPIDMVGQLSINEWNGTRKPQLMVEDIAVKEWQLFDWRG
TKHLQKSLPSFQKDEAACVTFGLQTEGPGELPVIGFNDSRVKDYSTLILLDLPERLEDLHVLLGEVSPERIYAVYSLRDD
AFMQTLPSREHFKYFYGMLKKKKTFDLEKDSALLARHKGWKVDSIKFICNVFFDLGFVTIKDGQLFMNTQPEQKSLTESR
TFQTRQEQMEVEKVLYYSTYKELKDWMETRLQITGAEVKEEIGYGL

Nucleotide


Download         Length: 2301 bp        

>NTDB_id=145066 AAV35_RS05195 WP_008588677.1 1046028..1048328(+) (recJ) [Salimicrobium jeotgali strain MJ3]
ATGTTAAAAAGTAAAATGAAATGGGATTTTACATACAGTTCGGATTCTGCCAACAGGCAGGAGTTGATAAATGAGTTACT
GGAGCAGCGCGGCTTGCATACGGAAGAGGAAAGAAACAGGTTTTTGCACCCGGCGCTTGCTGATTTACATGACCCTTTCC
TCATAAACGGAATGCGGAAAGCTGTGAACCGGGTCAAAGAGGCTATCCACTACGGAGAGCCCATTCTGATTTTCGGGGAT
TATGACGCAGATGGTGTCAGTTCGACAGCGTTAATGATGGAGTGTCTGCGATCGCTCGGAGCGGAGTGTGACTTTTATAT
TCCTAACAGGTTTACGGAAGGATACGGTCCAAACGAAAATGCATTCAGATGGGCCTCCGCACAGGGATACACGCTTATAA
TTACAGTGGACAACGGTATAGCCGCTGTGGAAGAAGCGAAAGTTGCAAAAGAATTGGGGATCGATCTCATTATTACGGAT
CACCACGAAGTCCAGAACGAACTGCCGGAGGCATTTGCGATTCTGCATCCGAAAACGTCTCTCCAGTATCCTTTTCAGGA
ACTGGCAGGGGTCGGGGTGGCGTTCAAATTCGCCCACGCTCTTCTGGAAGAGAAGCCGGTTCACCTGCTTGATCTTGTAG
CTATAGGAACGGTCGCCGACCTGGTGCCACTTGAAGATGAGAACAGGATACTTGTTTCCTTCGGACTTGAGGCTATTACA
AAGACGAAGCGCCCGGGGCTCCGTCAGCTGAAAAATTTGAATAGCATAGACGGAGACGTAGATGAAGAAGCGGTCGGATT
TATGATAGGTCCAAGAATGAACGCAGTCGGCCGCCTGCAGGATGCTTCTCCTGCCGTGGATCTTTTACTTACCAGGGATG
AAGAAGAGGCACAGGAACTGGCCGGGTTCGTTCAGGAACTGAATAAAGAGCGTCAGAAAATCGTTCAGGAAATAGCTGAC
GAAGCCGAGACACTGCTCGGGGAAGACGTGCAAGATGAAGTGATTGTGGTGGCCAGGGAAGGCTGGAACGCCGGAGTGCT
TGGCATCGTCGCTTCCAAGCTTGTGAGGAAATTCGACAGGCCTGCAATTGTTCTTACCATTGATAAGGAGAAAGGTCAGG
CGAAAGGGTCCGCCAGAAGTATAGATGCCTATGACATGTTCGAAAATTGCATGGAGCACAGGGATCTGTTTCTTCACTTC
GGCGGGCATTCCCAGGCTGCAGGTATGACACTGACGGAGGACAATATAGTTCCGCTGAGAGAAGAGTTGTCCCGACTTGC
GAGAGAAAAACTGGCGCCGGAGGACTACCGTCAGTCATTACCTGTCACGATGAGTCTCGATCTCAGTGAAGTGTCATTAC
AGCAGATAGAATTCGTCAATCAGCTGCGGCCATTCGGAATGGCTAATCCGAAACCGTATTTCCACGTCAGAAGCAAAGCG
AAGGAATTGAGGCTGATAGGCAGCAAAAAGAATCATATGAAAGTAACGCTGGAGCAGAACGGCTCCCGTCTCGACGCTAT
CGCGTTCGGACAGGGAGACGCATATCACTCGATCGCTCCTCAGTCTCCGATAGATATGGTAGGGCAGCTGAGTATCAACG
AGTGGAACGGAACGAGGAAACCACAGCTGATGGTGGAAGACATTGCAGTGAAAGAGTGGCAGCTGTTCGACTGGAGAGGA
ACGAAACATTTGCAGAAGTCTTTACCTTCCTTCCAGAAAGACGAAGCCGCCTGTGTCACTTTCGGGTTGCAGACGGAAGG
ACCCGGAGAGTTACCGGTGATCGGGTTCAACGACAGCAGGGTCAAAGATTACAGTACCTTGATTTTACTCGATCTCCCCG
AACGGCTTGAAGATCTGCATGTGCTCCTCGGGGAGGTATCACCTGAGCGTATTTACGCCGTCTACTCTTTGAGAGACGAT
GCGTTCATGCAGACGCTGCCGTCCCGGGAACATTTCAAGTACTTTTATGGAATGCTGAAGAAGAAGAAAACGTTTGACCT
TGAAAAAGATTCGGCTCTTCTCGCAAGACACAAGGGATGGAAAGTCGATTCGATAAAATTCATTTGTAACGTGTTTTTTG
ATTTGGGTTTTGTTACAATAAAAGATGGTCAATTGTTTATGAACACACAACCCGAACAGAAAAGCCTGACAGAATCCCGG
ACGTTCCAGACGAGACAGGAACAGATGGAAGTTGAAAAAGTACTATACTATTCGACATATAAAGAATTGAAAGATTGGAT
GGAAACCCGGCTGCAAATTACAGGGGCGGAAGTCAAGGAGGAAATAGGATATGGATTATAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(304-423)

RecJ OB domain (RecJ_OB)

(444-547)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(554-747)

DHH family (DHH)

(75-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K2H964

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

48.375

100

0.486

Multiple sequence alignment