Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | XI92_RS23570 | Genome accession | NZ_CP011349 |
| Coordinates | 4462239..4463018 (+) | Length | 259 a.a. |
| NCBI ID | WP_000421290.1 | Uniprot ID | A0A9W5VKA1 |
| Organism | Bacillus thuringiensis strain YC-10 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 4420793..4478464 | 4462239..4463018 | within | 0 |
Gene organization within MGE regions
Location: 4420793..4478464
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XI92_RS23370 (XI92_23370) | rsmB | 4421015..4422349 (+) | 1335 | WP_001249668.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| XI92_RS23375 (XI92_23375) | rlmN | 4422354..4423442 (+) | 1089 | WP_000450541.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| XI92_RS23380 (XI92_23380) | - | 4423447..4424199 (+) | 753 | WP_000648703.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| XI92_RS23385 (XI92_23385) | pknB | 4424208..4426181 (+) | 1974 | WP_000904748.1 | Stk1 family PASTA domain-containing Ser/Thr kinase | - |
| XI92_RS23390 (XI92_23390) | rsgA | 4426428..4427309 (+) | 882 | WP_001113932.1 | ribosome small subunit-dependent GTPase A | - |
| XI92_RS23395 (XI92_23395) | rpe | 4427312..4427956 (+) | 645 | WP_000589974.1 | ribulose-phosphate 3-epimerase | - |
| XI92_RS23400 (XI92_23400) | - | 4428026..4428706 (+) | 681 | WP_002132739.1 | thiamine diphosphokinase | - |
| XI92_RS23405 (XI92_23405) | spoVM | 4428773..4428853 (+) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| XI92_RS23410 (XI92_23410) | rpmB | 4428927..4429115 (-) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| XI92_RS23415 (XI92_23415) | - | 4429492..4429854 (+) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| XI92_RS23420 (XI92_23420) | - | 4429877..4431553 (+) | 1677 | WP_000027129.1 | DAK2 domain-containing protein | - |
| XI92_RS23425 (XI92_23425) | recG | 4431844..4433892 (+) | 2049 | WP_001000811.1 | ATP-dependent DNA helicase RecG | - |
| XI92_RS23430 (XI92_23430) | fapR | 4433981..4434574 (+) | 594 | WP_000747349.1 | transcription factor FapR | - |
| XI92_RS23435 (XI92_23435) | plsX | 4434571..4435563 (+) | 993 | WP_000684098.1 | phosphate acyltransferase PlsX | - |
| XI92_RS23440 (XI92_23440) | fabD | 4435578..4436522 (+) | 945 | WP_000515905.1 | ACP S-malonyltransferase | - |
| XI92_RS23445 (XI92_23445) | fabG | 4436522..4437262 (+) | 741 | WP_000911768.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| XI92_RS23450 (XI92_23450) | acpP | 4437332..4437565 (+) | 234 | WP_000786062.1 | acyl carrier protein | - |
| XI92_RS23455 (XI92_23455) | rncS | 4437624..4438361 (+) | 738 | WP_001146875.1 | ribonuclease III | - |
| XI92_RS23460 (XI92_23460) | - | 4438508..4438969 (+) | 462 | Protein_4538 | AAA family ATPase | - |
| XI92_RS23465 (XI92_23465) | ltrA | 4439673..4441478 (+) | 1806 | WP_000108316.1 | group II intron reverse transcriptase/maturase | - |
| XI92_RS23470 (XI92_23470) | smc | 4441576..4444683 (+) | 3108 | Protein_4540 | chromosome segregation protein SMC | - |
| XI92_RS23475 (XI92_23475) | ftsY | 4444699..4445688 (+) | 990 | WP_000007655.1 | signal recognition particle-docking protein FtsY | - |
| XI92_RS23480 (XI92_23480) | - | 4445822..4446154 (+) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| XI92_RS23485 (XI92_23485) | ffh | 4446167..4447516 (+) | 1350 | WP_000863460.1 | signal recognition particle protein | - |
| XI92_RS23490 (XI92_23490) | rpsP | 4447618..4447890 (+) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| XI92_RS23495 (XI92_23495) | - | 4447905..4448132 (+) | 228 | WP_000737401.1 | KH domain-containing protein | - |
| XI92_RS23500 (XI92_23500) | rimM | 4448253..4448768 (+) | 516 | WP_000170278.1 | ribosome maturation factor RimM | - |
| XI92_RS23505 (XI92_23505) | trmD | 4448768..4449502 (+) | 735 | WP_000686903.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| XI92_RS23510 (XI92_23510) | rplS | 4449649..4449993 (+) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| XI92_RS23515 (XI92_23515) | lepB | 4450095..4450646 (+) | 552 | WP_000711851.1 | signal peptidase I | - |
| XI92_RS23520 (XI92_23520) | ylqF | 4450667..4451557 (+) | 891 | WP_000236702.1 | ribosome biogenesis GTPase YlqF | - |
| XI92_RS23525 (XI92_23525) | - | 4451614..4452387 (+) | 774 | WP_001193513.1 | ribonuclease HII | - |
| XI92_RS23530 (XI92_23530) | sucC | 4452582..4453742 (+) | 1161 | WP_001020791.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| XI92_RS23535 (XI92_23535) | sucD | 4453762..4454664 (+) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| XI92_RS23540 (XI92_23540) | dprA | 4454752..4455621 (+) | 870 | WP_000818039.1 | DNA-processing protein DprA | - |
| XI92_RS23545 (XI92_23545) | topA | 4455766..4457844 (+) | 2079 | WP_001286963.1 | type I DNA topoisomerase | - |
| XI92_RS23550 (XI92_23550) | trmFO | 4457893..4459197 (+) | 1305 | WP_000213002.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| XI92_RS23555 (XI92_23555) | xerC | 4459263..4460162 (+) | 900 | WP_001101241.1 | tyrosine recombinase XerC | - |
| XI92_RS23560 (XI92_23560) | hslV | 4460205..4460747 (+) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| XI92_RS23565 (XI92_23565) | hslU | 4460770..4462161 (+) | 1392 | WP_000550087.1 | ATP-dependent protease ATPase subunit HslU | - |
| XI92_RS23570 (XI92_23570) | codY | 4462239..4463018 (+) | 780 | WP_000421290.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| XI92_RS23575 (XI92_23575) | rpsB | 4463367..4464068 (+) | 702 | WP_000111485.1 | 30S ribosomal protein S2 | - |
| XI92_RS23580 (XI92_23580) | tsf | 4464172..4465059 (+) | 888 | WP_001018578.1 | translation elongation factor Ts | - |
| XI92_RS23585 (XI92_23585) | pyrH | 4465126..4465848 (+) | 723 | WP_000042668.1 | UMP kinase | - |
| XI92_RS23590 (XI92_23590) | frr | 4465851..4466408 (+) | 558 | WP_000531501.1 | ribosome recycling factor | - |
| XI92_RS23595 (XI92_23595) | uppS | 4466494..4467270 (+) | 777 | WP_000971296.1 | isoprenyl transferase | - |
| XI92_RS23600 (XI92_23600) | cdsA | 4467288..4468079 (+) | 792 | WP_000813592.1 | phosphatidate cytidylyltransferase | - |
| XI92_RS23605 (XI92_23605) | dxr | 4468103..4469245 (+) | 1143 | WP_000790372.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| XI92_RS23610 (XI92_23610) | rseP | 4469263..4470519 (+) | 1257 | WP_001090245.1 | RIP metalloprotease RseP | - |
| XI92_RS23615 (XI92_23615) | - | 4470629..4472329 (+) | 1701 | WP_000814333.1 | proline--tRNA ligase | - |
| XI92_RS23620 (XI92_23620) | - | 4472454..4476755 (+) | 4302 | WP_000060004.1 | PolC-type DNA polymerase III | - |
| XI92_RS23625 (XI92_23625) | rimP | 4477092..4477562 (+) | 471 | WP_000359096.1 | ribosome maturation factor RimP | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28793.05 Da Isoelectric Point: 4.7165
>NTDB_id=145015 XI92_RS23570 WP_000421290.1 4462239..4463018(+) (codY) [Bacillus thuringiensis strain YC-10]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=145015 XI92_RS23570 WP_000421290.1 4462239..4463018(+) (codY) [Bacillus thuringiensis strain YC-10]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCGAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCGAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.467 |
100 |
0.815 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |