Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   YH61_RS04815 Genome accession   NZ_CP011330
Coordinates   1041648..1041911 (-) Length   87 a.a.
NCBI ID   WP_000584953.1    Uniprot ID   A0AAV3IGW5
Organism   Helicobacter pylori J99     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1036648..1046911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YH61_RS04805 (YH61_04800) - 1037634..1038974 (-) 1341 WP_001881006.1 COG3014 family protein -
  YH61_RS04810 (YH61_04805) comB4 1039283..1041646 (-) 2364 WP_000890516.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  YH61_RS04815 (YH61_04810) comB3 1041648..1041911 (-) 264 WP_000584953.1 hypothetical protein Machinery gene
  YH61_RS04820 (YH61_04815) comB2 1041911..1042192 (-) 282 WP_001272691.1 TrbC/VirB2 family protein Machinery gene
  YH61_RS04825 (YH61_04820) - 1042339..1043166 (-) 828 WP_001154969.1 DUF5718 family protein -
  YH61_RS04830 (YH61_04825) - 1043256..1044308 (-) 1053 WP_000809440.1 MnmA/TRMU family protein -
  YH61_RS04835 (YH61_04830) dnaG 1044305..1045984 (-) 1680 WP_000601572.1 DNA primase -
  YH61_RS04840 (YH61_04835) groES 1046272..1046628 (+) 357 WP_000671934.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10020.11 Da        Isoelectric Point: 9.5290

>NTDB_id=144669 YH61_RS04815 WP_000584953.1 1041648..1041911(-) (comB3) [Helicobacter pylori J99]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=144669 YH61_RS04815 WP_000584953.1 1041648..1041911(-) (comB3) [Helicobacter pylori J99]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATCTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCACTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATCGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

98.851

100

0.989

Multiple sequence alignment