Detailed information NTG0144590

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: AWM80_RS13835
• Genome accession: NZ_CP014166
• Coordinates: 2653021..2654286 (+)
• Length: 421 a.a.
• NCBI ID: WP_004398500.1
• Uniprot ID: O34528
• Organism: Bacillus subtilis subsp. subtilis strain CU1050
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2648021..2659286

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AWM80_RS13815 (AWM80_13820)	yrrB	2649392..2650012 (-)	621	WP_010886584.1	tetratricopeptide repeat protein	-
AWM80_RS13820 (AWM80_13825)	mnmA	2650098..2651213 (-)	1116	WP_004398509.1	tRNA 2-thiouridine(34) synthase MnmA	-
AWM80_RS13825 (AWM80_13830)	iscSA	2651244..2652383 (-)	1140	WP_003246057.1	cysteine desulfurase family protein	-
AWM80_RS13830 (AWM80_13835)	cymR	2652402..2652818 (-)	417	WP_003225879.1	cysteine metabolism transcriptional regulator CymR	-
AWM80_RS13835 (AWM80_13840)	rarA	2653021..2654286 (+)	1266	WP_004398500.1	replication-associated recombination protein A	Machinery gene
AWM80_RS13840 (AWM80_13845)	tcdA	2654328..2655092 (-)	765	WP_009967893.1	tRNA threonylcarbamoyladenosine dehydratase	-
AWM80_RS13850 (AWM80_13855)	aspS	2655428..2657206 (-)	1779	WP_003229758.1	aspartate--tRNA ligase	-
AWM80_RS13855 (AWM80_13860)	hisS	2657220..2658494 (-)	1275	WP_003229755.1	histidine--tRNA ligase	-
AWM80_RS13860 (AWM80_13865)	yrzK	2658876..2659046 (-)	171	WP_004399157.1	YrzK family protein	-

Sequence

Protein

• Length: 421 a.a.
• Molecular weight: 46514.38 Da
• Isoelectric Point: 7.2043

>NTDB_id=144590 AWM80_RS13835 WP_004398500.1 2653021..2654286(+) (rarA) [Bacillus subtilis subsp. subtilis strain CU1050]
MKPLAYRMRPTKIEDIIGQQHLVAEDKIIGRMVQAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDME
IVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPELIKQALER
ALHDEHRGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESADGEIHITLETAEECLQKKSFSHDKDGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESIARRLLVIAYEDIGLASPQAGPRVLNAIQTAERVGFPEARIPLANAV
IELCLSPKSNSAILAIDEALADIRAGKIGDVPKHLKDAHYKGAQELGRGIDYKYPHNYDNGWVEQQYLPDPLKNKQYYKP
KQTGKFESALKQVYDKLMKRK

Nucleotide

• Length: 1266 bp

>NTDB_id=144590 AWM80_RS13835 WP_004398500.1 2653021..2654286(+) (rarA) [Bacillus subtilis subsp. subtilis strain CU1050]
ATGAAGCCATTGGCATATCGGATGCGTCCGACAAAAATAGAGGATATTATCGGCCAGCAGCATCTGGTGGCTGAAGATAA
AATTATTGGCAGAATGGTCCAGGCAAAACATTTGTCATCCATGATTTTGTACGGGCCGCCCGGAATTGGAAAAACATCAA
TCGCAACAGCAATCGCCGGTTCAACAAGTATTGCTTTTCGAAAGCTGAATGCTGTCATTAACAATAAAAAAGATATGGAA
ATCGTAGCTCAGGAAGCCAAGATGTCCGGCCAAGTGATTTTGATTCTGGATGAAGTCCACAGGCTGGATAAAGGAAAACA
GGATTTTCTATTACCCTATTTAGAAAACGGAATGATCATTTTGATCGGAGCAACGACGGCTAACCCGTATCATGCCATTA
ATCCGGCGATCAGAAGCCGGACCCAGATTTTTGAGCTTGAACCGTTAACACCTGAACTGATTAAACAGGCACTGGAACGT
GCGCTCCATGATGAGCATCGGGGCCTTGGCACCTATTCTGTATCCATTGATGATCAGGCGATGGAGCATTTTGCCCACGG
ATGCGGAGGAGATGTCCGCTCCGCTTTAAATGCGCTTGAGCTTGCCGTGTTGTCAACGAAGGAGTCAGCAGACGGTGAAA
TTCACATTACATTAGAAACCGCGGAAGAATGCTTGCAGAAAAAAAGCTTTTCTCACGATAAAGATGGTGACGCGCATTAT
GATGTACTGTCCGCTTTTCAAAAATCAATCCGCGGCTCTGATGCCAACGCTGCTCTTCACTATTTGGCTAGATTAATTGA
AGCCGGTGATCTGGAGAGCATCGCAAGACGATTGCTTGTTATCGCCTATGAGGATATCGGTTTAGCAAGCCCGCAAGCCG
GCCCTAGAGTGCTGAACGCTATTCAGACCGCTGAGCGAGTCGGGTTTCCTGAAGCGCGAATCCCGCTGGCCAACGCAGTT
ATTGAGCTTTGCCTCTCACCGAAATCAAACTCTGCCATTCTGGCAATCGATGAGGCCCTGGCAGATATCAGAGCCGGAAA
AATTGGGGATGTCCCGAAGCATTTAAAAGACGCGCATTATAAAGGAGCTCAGGAATTAGGAAGAGGAATCGACTATAAAT
ACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCG
AAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (172-251)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

3D structure

• AlphaFold DB: O34528

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	100	100	1