Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AWB63_RS08020 Genome accession   NZ_CP014144
Coordinates   1764519..1765304 (+) Length   261 a.a.
NCBI ID   WP_002884784.1    Uniprot ID   -
Organism   Streptococcus salivarius strain JF     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1759519..1770304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWB63_RS07995 (AWB63_07995) - 1759610..1760338 (+) 729 WP_022495913.1 LPXTG cell wall anchor domain-containing protein -
  AWB63_RS08000 (AWB63_08000) pflA 1760525..1761325 (+) 801 WP_002884535.1 pyruvate formate-lyase-activating protein -
  AWB63_RS08005 (AWB63_08005) - 1761395..1762147 (+) 753 WP_014634961.1 hypothetical protein -
  AWB63_RS08010 (AWB63_08010) - 1762226..1762678 (-) 453 WP_002884397.1 universal stress protein -
  AWB63_RS08015 (AWB63_08015) - 1763038..1764252 (+) 1215 WP_002884715.1 pyridoxal phosphate-dependent aminotransferase -
  AWB63_RS08020 (AWB63_08020) codY 1764519..1765304 (+) 786 WP_002884784.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AWB63_RS08025 (AWB63_08025) - 1765370..1765921 (+) 552 WP_004183314.1 cysteine hydrolase family protein -
  AWB63_RS08030 (AWB63_08030) - 1766077..1767516 (+) 1440 WP_022496408.1 6-phospho-beta-glucosidase -
  AWB63_RS08035 (AWB63_08035) - 1767711..1768919 (+) 1209 WP_038676671.1 glycosyltransferase -
  AWB63_RS08040 (AWB63_08040) - 1768923..1769804 (+) 882 WP_038676670.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28829.85 Da        Isoelectric Point: 4.3715

>NTDB_id=144441 AWB63_RS08020 WP_002884784.1 1764519..1765304(+) (codY) [Streptococcus salivarius strain JF]
MANLLAKTRKITSILQRSVDSLEGDLPYNNMAAQLADIIDCNAAIVNGGGALLGFAMKYKTNNDRVEEFFEAKQLPEEYT
RGISRVYDTQENIGIDSDLTIFPVESKDDFPDGLTTIAPIYGGGMRLGSFIIWRNDHDFVDEDLILVEIASTVVGLQLLN
LQTENLEETIRKQTAINMAINTLSYSEIKAVSAILNELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLNEGIYDKLKEYE

Nucleotide


Download         Length: 786 bp        

>NTDB_id=144441 AWB63_RS08020 WP_002884784.1 1764519..1765304(+) (codY) [Streptococcus salivarius strain JF]
ATGGCAAATTTGCTGGCTAAAACACGTAAAATTACATCTATCTTGCAACGCTCAGTAGACAGCTTGGAAGGAGATCTTCC
ATACAACAACATGGCTGCTCAATTGGCGGATATCATTGATTGTAACGCTGCTATCGTTAATGGTGGTGGTGCTCTCCTTG
GTTTTGCCATGAAGTACAAAACCAACAATGATCGTGTGGAAGAGTTTTTTGAAGCCAAACAACTTCCAGAAGAATACACA
CGTGGAATCAGCCGTGTTTATGACACTCAAGAAAACATTGGTATTGACAGTGACTTGACCATTTTCCCTGTGGAATCAAA
AGATGACTTCCCAGATGGTTTGACTACAATTGCCCCTATCTATGGTGGTGGTATGCGTCTTGGTTCTTTCATCATTTGGC
GTAACGACCATGATTTTGTGGATGAAGATCTTATCTTGGTTGAGATTGCCTCTACAGTAGTTGGGTTGCAGTTGTTGAAC
CTTCAAACAGAGAACTTGGAAGAAACAATTCGTAAACAAACAGCTATTAACATGGCTATTAATACCTTGTCTTACTCAGA
AATCAAGGCAGTTTCAGCTATCTTGAATGAGTTGGACGGTTTGGAAGGTCGCTTGACAGCGTCTGTTATCGCTGACCGTA
TCGGAATTACACGTTCAGTTATCGTTAATGCCCTTCGTAAGTTGGAATCAGCTGGTATTATTGAGAGCCGTTCACTCGGT
ATGAAAGGGACTTATCTTAAAGTCCTTAACGAAGGTATCTACGATAAATTGAAAGAATACGAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

64.981

98.467

0.64
  codY Bacillus subtilis subsp. subtilis str. 168

53.036

94.636

0.502