Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   AWB63_RS07925 Genome accession   NZ_CP014144
Coordinates   1746864..1747607 (+) Length   247 a.a.
NCBI ID   WP_022495903.1    Uniprot ID   -
Organism   Streptococcus salivarius strain JF     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1741864..1752607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWB63_RS07905 (AWB63_07905) dinB 1742375..1743484 (+) 1110 WP_014634976.1 DNA polymerase IV -
  AWB63_RS07910 (AWB63_07910) - 1743585..1744475 (+) 891 WP_014634975.1 hypothetical protein -
  AWB63_RS07915 (AWB63_07915) - 1744690..1745520 (+) 831 WP_014634974.1 transporter substrate-binding domain-containing protein -
  AWB63_RS07920 (AWB63_07920) - 1746118..1746864 (+) 747 WP_118189357.1 amino acid ABC transporter permease -
  AWB63_RS07925 (AWB63_07925) amiE 1746864..1747607 (+) 744 WP_022495903.1 amino acid ABC transporter ATP-binding protein Regulator
  AWB63_RS07930 (AWB63_07930) - 1747820..1748044 (+) 225 WP_022495904.1 DUF4059 family protein -
  AWB63_RS07935 (AWB63_07935) trxB 1748077..1749030 (+) 954 WP_255296714.1 thioredoxin-disulfide reductase -
  AWB63_RS07940 (AWB63_07940) rsmD 1749171..1749719 (+) 549 WP_230955163.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AWB63_RS07945 (AWB63_07945) coaD 1749752..1750249 (+) 498 WP_038676687.1 pantetheine-phosphate adenylyltransferase -
  AWB63_RS07950 (AWB63_07950) sepM 1750188..1751303 (+) 1116 WP_371212477.1 SepM family pheromone-processing serine protease Regulator
  AWB63_RS07955 (AWB63_07955) - 1751387..1752331 (+) 945 WP_038676684.1 TIGR01212 family radical SAM protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27696.87 Da        Isoelectric Point: 7.4642

>NTDB_id=144439 AWB63_RS07925 WP_022495903.1 1746864..1747607(+) (amiE) [Streptococcus salivarius strain JF]
MISIKNLTKEFSGQKVLDGINFDIKKGEVVALVGASGAGKSTILRSLNYLEQPDSGTITIDDFKVDFKTITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDEEATKIAKEELAKVGLSNRENHYPRHLSGGQKQRVALARALAMKPDV
LLLDEPTSALDPELVGEVEKSIADAAKSGQTMILVSHDMNFVYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=144439 AWB63_RS07925 WP_022495903.1 1746864..1747607(+) (amiE) [Streptococcus salivarius strain JF]
ATGATTAGCATCAAAAATTTGACCAAGGAATTTTCAGGCCAAAAGGTTCTTGATGGCATTAACTTCGATATTAAAAAAGG
TGAAGTTGTAGCGCTTGTCGGTGCCTCTGGTGCAGGTAAGTCAACTATCCTTCGTAGCTTGAACTATTTGGAACAACCTG
ATTCTGGCACTATTACCATTGATGATTTTAAAGTAGACTTCAAGACTATCACTAAAGAACAAATTCTTACGCTTCGCCGT
AAGTTGGCCATGGTTTTCCAACAGTTCAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTTAAGAT
TGTTAAGAAACTTTCTGACGAAGAAGCTACTAAGATTGCCAAAGAAGAGCTTGCTAAGGTTGGACTTTCAAATCGCGAAA
ATCACTACCCACGTCACTTGTCAGGTGGTCAAAAGCAACGTGTGGCCTTGGCCCGTGCCCTTGCTATGAAGCCAGATGTG
CTCTTGCTTGACGAACCAACATCTGCCCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGCTGATGCAGCTAA
GTCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTGTTTATCAAGTGGCTGACAAGGTACTCTTCCTTGAAA
AAGGGCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCGAAAGAAGAACGAACAAAAGAATTTTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.712

100

0.36