Detailed information NTG0144162

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: AL464_RS15235
• Genome accession: NZ_CP014046
• Coordinates: 2965154..2966443 (-)
• Length: 429 a.a.
• NCBI ID: WP_043043278.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain ATCC 17802
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2960154..2971443

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AL464_RS15210 (AL464_13780)	bioA	2960634..2961914 (+)	1281	WP_029845746.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-
AL464_RS15215 (AL464_13785)	-	2961984..2962250 (-)	267	WP_015296513.1	DksA/TraR family C4-type zinc finger protein	-
AL464_RS26085 (AL464_13790)	-	2962385..2962825 (-)	441	Protein_2608	hypothetical protein	-
AL464_RS15225 (AL464_13795)	-	2962819..2963385 (-)	567	WP_225868813.1	ATPase	-
AL464_RS15230 (AL464_13800)	serS	2963755..2965062 (-)	1308	WP_005495761.1	serine--tRNA ligase	-
AL464_RS15235 (AL464_13805)	rarA	2965154..2966443 (-)	1290	WP_043043278.1	replication-associated recombination protein A	Machinery gene
AL464_RS15240 (AL464_13810)	lolA	2966510..2967136 (-)	627	WP_029805927.1	outer membrane lipoprotein chaperone LolA	-
AL464_RS15245 (AL464_13815)	-	2967211..2970297 (-)	3087	WP_029805929.1	DNA translocase FtsK	-
AL464_RS15250 (AL464_13820)	lrp	2970450..2970944 (-)	495	WP_047022953.1	leucine-responsive transcriptional regulator Lrp	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 47621.81 Da
• Isoelectric Point: 5.8544

>NTDB_id=144162 AL464_RS15235 WP_043043278.1 2965154..2966443(-) (rarA) [Vibrio parahaemolyticus strain ATCC 17802]
MRPQTIEQYIGQQHILGPGKPLRRALEAGHVHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAR
ENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLDKEEISLALNQAIN
DKERGLGNTPANFADNVLDRLAELVNGDARMSLNYLELLYDMAEENDQGEKEITLKLLAEVAGEKVSRFDNKGDIWYDLI
SAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVY
LACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPTSLMKDMGYGAEYRYAHDEPGAYAAGEQYLPPEMADRKYYQPT
NRGLETKIGEKLDYLAKLDANSQQKRYEK

Nucleotide

• Length: 1290 bp

>NTDB_id=144162 AL464_RS15235 WP_043043278.1 2965154..2966443(-) (rarA) [Vibrio parahaemolyticus strain ATCC 17802]
ATGAGACCGCAAACTATTGAGCAGTACATCGGTCAGCAACACATTCTTGGCCCGGGTAAACCCCTGCGTCGCGCGTTAGA
GGCTGGCCATGTCCACTCAATGATCCTTTGGGGTCCTCCTGGTACAGGTAAAACCACGTTAGCGGAAGTCGCTGCTAATT
ACGCCAATGCGGAAGTTGAACGCGTGTCTGCGGTGACGTCCGGTGTGAAAGAGATTCGTGCTGCAATCGAAAAAGCGCGC
GAGAACAAAATGGCGGGTCGCCGCACCATCTTGTTTGTGGATGAGGTCCATCGCTTCAACAAATCGCAACAAGATGCGTT
CTTACCACATATTGAAGATGGAACCGTCACGTTTATTGGCGCAACGACAGAGAACCCGTCTTTCGAACTGAACAACGCAT
TGTTGTCTCGTGCTCGAGTCTACAAGCTGACTTCACTGGATAAAGAAGAGATCTCACTCGCACTAAATCAAGCGATTAAC
GACAAAGAACGAGGGCTGGGCAATACGCCAGCGAACTTTGCTGATAATGTGTTAGACCGTCTAGCCGAGTTGGTGAACGG
TGATGCTCGCATGTCTCTTAACTACCTTGAGCTTCTCTACGATATGGCAGAAGAGAATGATCAAGGTGAAAAAGAGATAA
CACTCAAACTGCTTGCTGAAGTAGCCGGGGAGAAAGTCTCTCGCTTCGATAATAAAGGCGACATTTGGTACGATTTGATC
TCCGCTGTGCACAAATCTATTCGTGGATCAAACCCAGATGCCGCTTTGTATTGGGCTGCTCGTATGATAGCTGCAGGTTG
TGATCCACTTTACATTGCCCGCCGATTACTTGCGATAGCATCGGAAGATGTCGGCAATGCGGACCCTAGAGCCATGCAAG
TTGCACTCTCCGCGTGGGACTGTTTTACACGTGTTGGTCCAGCAGAAGGTGAGCGTGCGATTGCTCAAGCAATTGTTTAT
CTCGCGTGCGCTCCAAAGAGTAATGCCGTTTATGTTGCTTGGAAACAAGCGCTCACTGACGCACATAACTTGCCTGAATA
TGAAGTGCCGCATCACTTGCGTAATGCACCCACCAGTCTGATGAAAGACATGGGCTATGGCGCAGAATATCGATATGCTC
ACGACGAGCCGGGTGCTTATGCAGCGGGTGAGCAATATTTGCCACCAGAAATGGCGGATCGTAAGTACTATCAGCCGACA
AATCGCGGTCTAGAAACCAAAATCGGCGAAAAGTTAGATTACTTGGCTAAATTAGACGCAAATAGCCAACAAAAGCGCTA
TGAAAAGTAG

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (169-248)

• MgsA AAA+ ATPase C terminal (MgsA_C) (249-415)

• ATPase family associated with various cellular activities (AAA) (AAA) (34-139)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.474	97.436	0.385