Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   WV34_RS08765 Genome accession   NZ_CP011252
Coordinates   1705042..1705821 (+) Length   259 a.a.
NCBI ID   WP_013352252.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MT45     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1700042..1710821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS08745 (WV34_08545) trmFO 1700729..1702036 (+) 1308 WP_013352248.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  WV34_RS08750 (WV34_08550) xerC 1702106..1703023 (+) 918 WP_013352249.1 tyrosine recombinase XerC -
  WV34_RS08755 (WV34_08555) hslV 1703039..1703584 (+) 546 WP_013352250.1 ATP-dependent protease subunit HslV -
  WV34_RS08760 (WV34_08560) hslU 1703601..1705004 (+) 1404 WP_014470401.1 HslU--HslV peptidase ATPase subunit -
  WV34_RS08765 (WV34_08565) codY 1705042..1705821 (+) 780 WP_013352252.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  WV34_RS08770 (WV34_08570) flgB 1706176..1706565 (+) 390 WP_013352253.1 flagellar basal body rod protein FlgB -
  WV34_RS08775 (WV34_08575) flgC 1706565..1707017 (+) 453 WP_013352254.1 flagellar basal body rod protein FlgC -
  WV34_RS08780 (WV34_08580) fliE 1707028..1707348 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  WV34_RS08785 (WV34_08585) fliF 1707391..1709001 (+) 1611 WP_071346815.1 flagellar basal-body MS-ring/collar protein FliF -
  WV34_RS08790 (WV34_08590) fliG 1709014..1710030 (+) 1017 WP_013352256.1 flagellar motor switch protein FliG -
  WV34_RS08795 (WV34_08595) fliH 1710023..1710778 (+) 756 WP_071346814.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29028.23 Da        Isoelectric Point: 4.6017

>NTDB_id=143882 WV34_RS08765 WP_013352252.1 1705042..1705821(+) (codY) [Bacillus amyloliquefaciens strain MT45]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=143882 WV34_RS08765 WP_013352252.1 1705042..1705821(+) (codY) [Bacillus amyloliquefaciens strain MT45]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTAGGCTACTCTATTA
ATCAGCAGATCGAAAATGACCGCATGAAAAAAATGCTGGAAGACCGCCAGTTCCCGGAAGAGTACACGAAAAATCTGTTC
AACGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTTGAAAACAGAGACCTGTTCCA
GGCAGGCTTAACGACGATTGTTCCGATTATCGGCGGAGGCGAGCGTCTGGGCACATTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAAGCACGAAGCAAAGCAGTCGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTGGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCCGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGAACT
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAGTTGGAAAATCTTAAATCACATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment