Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SMQ301_RS02330 Genome accession   NZ_CP011217
Coordinates   417984..419762 (+) Length   592 a.a.
NCBI ID   WP_011225561.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain SMQ-301     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 412984..424762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMQ301_RS02310 (SMQ301_0427) gdhA 413523..414875 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  SMQ301_RS02315 (SMQ301_0428) - 415133..415543 (+) 411 WP_011680804.1 peptide deformylase -
  SMQ301_RS02320 (SMQ301_0429) rcrR 415733..416176 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SMQ301_RS02325 (SMQ301_0430) rcrP 416180..417994 (+) 1815 WP_011680805.1 ABC transporter ATP-binding protein Regulator
  SMQ301_RS02330 (SMQ301_0431) rcrQ 417984..419762 (+) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  SMQ301_RS02335 (SMQ301_0432) - 419918..420289 (+) 372 WP_224103209.1 GNAT family acetyltransferase -
  SMQ301_RS11975 (SMQ301_0434) - 420312..421475 (+) 1164 Protein_390 sensor histidine kinase -
  SMQ301_RS02345 (SMQ301_0436) pyrH 421711..422448 (+) 738 WP_002949867.1 UMP kinase -
  SMQ301_RS02350 (SMQ301_0437) frr 422463..423020 (+) 558 WP_002949868.1 ribosome recycling factor -
  SMQ301_RS02355 (SMQ301_0438) cvfB 423111..423968 (+) 858 WP_014608029.1 RNA-binding virulence regulatory protein CvfB -
  SMQ301_RS02360 (SMQ301_0439) - 423977..424192 (+) 216 WP_002944188.1 YozE family protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65120.17 Da        Isoelectric Point: 5.0166

>NTDB_id=143616 SMQ301_RS02330 WP_011225561.1 417984..419762(+) (rcrQ) [Streptococcus thermophilus strain SMQ-301]
MENKPKTSSYKRLKPYIKGFQVPFVLAIVGAIISAVITVIGPDKLKEITNLITDGITPTKMGVIPGIDLDKVGSIALTLA
VLYAISAIVGYLQSFTVVTITQRFSQRFRTAIQKKINTVPLNYFDSHSQGDILSRVTNDVDLLGQSLSQGLGTLITSSIL
LVAAIIMMFYSNVTMAFTAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNASKESSQDFKG
LNDKLYNSMWQSQFISGIMMPLMIFIGNFGYVMVCLVGAVKVIDGSLTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSAT
AAIGSIFEFLEEKDMDDESVKTAELTDTKGQVVFDHVSFGYTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDKGRITIDGVDTNDMKRETVHDQFSMVLQDTWLFEGTIRDNLIYNQENISDEQVIATAKAVGVHHFITTLPKGYDT
YLDDSVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDELMAANGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=143616 SMQ301_RS02330 WP_011225561.1 417984..419762(+) (rcrQ) [Streptococcus thermophilus strain SMQ-301]
ATGGAAAATAAGCCAAAAACATCGTCCTATAAACGTTTAAAACCCTATATTAAAGGTTTCCAAGTTCCCTTTGTCCTTGC
GATTGTTGGAGCCATTATTTCAGCAGTTATAACTGTTATTGGACCTGATAAATTAAAAGAAATCACCAATCTTATTACAG
ATGGGATTACGCCAACTAAGATGGGGGTTATTCCGGGCATCGATTTAGACAAGGTGGGCAGCATTGCTTTAACCTTGGCT
GTTTTATATGCCATTTCAGCCATTGTTGGTTACTTACAAAGTTTTACCGTTGTAACAATTACGCAACGATTTTCACAACG
TTTCCGTACAGCAATCCAAAAGAAAATCAACACCGTACCTCTTAATTATTTTGATAGTCATTCTCAAGGAGACATACTCT
CTCGTGTGACTAATGACGTTGACCTTTTGGGACAATCGCTTAGTCAGGGTCTGGGTACTCTAATTACTTCAAGCATTCTC
TTGGTAGCAGCCATTATTATGATGTTCTACTCAAATGTTACTATGGCTTTCACTGCGATTGGTTCTGTCTTGATAGGATT
TGTTCTAGTAGCCTTTATCATGGGCTTCTCGCAACCACTTTTTAAACGCCAACAAGAAAATTTGGCTAACATTAATGGGT
ACATTGAAGAAATCTACACAGGTCAAGCAGTTGTAACGAGCTACAATGCATCTAAAGAAAGCAGTCAAGATTTCAAGGGG
CTTAATGATAAGCTCTATAATTCAATGTGGCAATCTCAGTTTATTTCTGGTATTATGATGCCACTTATGATTTTCATCGG
TAACTTTGGTTACGTCATGGTCTGCTTGGTAGGTGCTGTTAAGGTAATTGACGGAAGCCTGACCATCGGTGATGTGGTAG
CCTTCATGACCTATGTTCGTATCTTTTCACAACCTCTTTCTCAAATTGCACAAGGGATTACACAACTCCAATCAGCAACT
GCAGCTATTGGTAGTATCTTTGAATTTTTGGAAGAAAAAGATATGGACGACGAGTCAGTCAAGACAGCTGAGTTGACAGA
TACCAAGGGTCAAGTAGTCTTTGACCATGTTTCCTTTGGTTATACTCCTGAAAAGACTATCATTCATGATTTTTCAGCTC
TTGCCAAGCCAGGGCAAAAGATTGCTATTGTTGGTCCGACGGGTGCTGGTAAGACAACCATTGTTAACCTGCTTATGAAA
TTCTATAATATCGATAAAGGCCGTATCACCATTGACGGTGTGGATACGAACGACATGAAGCGTGAGACCGTCCATGATCA
ATTTTCTATGGTACTTCAAGACACTTGGCTCTTTGAAGGAACGATTCGAGATAATTTGATTTACAACCAAGAAAATATCT
CTGACGAGCAAGTTATTGCTACAGCCAAGGCCGTGGGTGTTCATCACTTCATCACCACACTTCCAAAAGGTTATGATACC
TATTTGGATGATTCTGTTACTTTATCAGTTGGTCAGAAACAACTTTTGACCATTGCGCGTGCACTTCTTAAGGATGCCCC
TCTTCTTATCTTGGACGAGGCAACATCATCAGTTGACACACGAACAGAAGAATTGATTCAGAAGGCTATGGACAAGCTTA
TGGAGGGTCGTACATCCTTTGTCATTGCCCACCGCTTATCAACCATTCGAAATGCGGACCTCATCCTTGTGATGAAAGAT
GGTAACATTATTGAACAGGGAAATCATGATGAGCTCATGGCAGCAAATGGATTCTATGCTGATCTTTATAATAGTCAGTT
TACGGAAGAAGTGGCCTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-306)

ABC transporter (ABC_tran)

(371-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

68.919

100

0.689

Multiple sequence alignment