Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   AVT04_RS06760 Genome accession   NZ_CP013939
Coordinates   1255815..1256558 (+) Length   247 a.a.
NCBI ID   WP_011226469.1    Uniprot ID   Q5M2Y9
Organism   Streptococcus thermophilus strain S9     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1250815..1261558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT04_RS06740 (AVT04_06740) dinB 1251650..1252753 (+) 1104 WP_011227504.1 DNA polymerase IV -
  AVT04_RS06745 (AVT04_06745) - 1253039..1253272 (+) 234 WP_002947030.1 hypothetical protein -
  AVT04_RS06750 (AVT04_06750) - 1253853..1254680 (+) 828 WP_041827091.1 transporter substrate-binding domain-containing protein -
  AVT04_RS06755 (AVT04_06755) - 1255069..1255815 (+) 747 WP_095559509.1 amino acid ABC transporter permease -
  AVT04_RS06760 (AVT04_06760) amiE 1255815..1256558 (+) 744 WP_011226469.1 amino acid ABC transporter ATP-binding protein Regulator
  AVT04_RS06765 (AVT04_06765) - 1256773..1256997 (+) 225 WP_011226468.1 DUF4059 family protein -
  AVT04_RS06770 (AVT04_06770) trxB 1257063..1257983 (+) 921 WP_011226467.1 thioredoxin-disulfide reductase -
  AVT04_RS06775 (AVT04_06775) rsmD 1258074..1258673 (+) 600 WP_011227500.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AVT04_RS06780 (AVT04_06780) coaD 1258707..1259204 (+) 498 WP_011226465.1 pantetheine-phosphate adenylyltransferase -
  AVT04_RS06785 (AVT04_06785) sepM 1259182..1260258 (+) 1077 WP_011226464.1 SepM family pheromone-processing serine protease Regulator
  AVT04_RS06790 (AVT04_06790) - 1260343..1261287 (+) 945 WP_011226463.1 TIGR01212 family radical SAM protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27763.89 Da        Isoelectric Point: 5.4718

>NTDB_id=143244 AVT04_RS06760 WP_011226469.1 1255815..1256558(+) (amiE) [Streptococcus thermophilus strain S9]
MISIKNLTKEFSGQKVLDGIDIDIEKGEVVALVGASGAGKSTILRCLNYLEQPDSGTIAIDDFKVDFETITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDDEATKIAKEELTKVGLSNRENYYPRHLSGGQKQRVALARALAMRPDV
LLLDEPTSALDPELVGEVEKSIVDAAKSGQTMILVSHDMNFIYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=143244 AVT04_RS06760 WP_011226469.1 1255815..1256558(+) (amiE) [Streptococcus thermophilus strain S9]
ATGATTAGTATCAAAAATTTGACCAAGGAATTTTCAGGACAAAAGGTTCTCGATGGCATCGATATTGACATTGAAAAAGG
TGAAGTTGTGGCTCTTGTTGGTGCCTCTGGTGCAGGGAAGTCGACTATCCTTCGTTGCTTGAACTATTTGGAACAACCTG
ATTCTGGTACTATTGCCATTGATGATTTCAAGGTGGATTTTGAAACAATTACCAAGGAGCAAATCCTTACTCTTCGTCGT
AAGTTGGCCATGGTGTTCCAACAGTTCAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTCAAGAT
TGTTAAGAAACTTTCTGACGACGAAGCTACCAAGATTGCTAAAGAAGAGCTCACTAAGGTTGGGCTTTCTAATCGTGAAA
ATTACTACCCACGTCACTTGTCGGGTGGTCAAAAGCAACGTGTGGCTTTGGCTCGTGCCCTTGCAATGAGGCCTGATGTG
CTCTTGCTTGACGAACCAACATCTGCCCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGTAGATGCGGCTAA
ATCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTATTTATCAAGTGGCTGACAAGGTGCTTTTCCTTGAAA
AAGGTCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCAAAAGAAGAGCGAACAAAAGAATTCTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M2Y9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.962

100

0.364