Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AVT04_RS02230 Genome accession   NZ_CP013939
Coordinates   423891..425678 (-) Length   595 a.a.
NCBI ID   WP_011225638.1    Uniprot ID   Q5M5E9
Organism   Streptococcus thermophilus strain S9     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 418891..430678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT04_RS02210 (AVT04_02210) - 419728..420438 (+) 711 WP_004197213.1 LytR/AlgR family response regulator transcription factor -
  AVT04_RS02215 (AVT04_02215) - 420438..421733 (+) 1296 WP_011680875.1 sensor histidine kinase -
  AVT04_RS02220 (AVT04_02220) - 421899..422600 (-) 702 WP_041826983.1 glucosamine-6-phosphate deaminase -
  AVT04_RS02225 (AVT04_02225) queA 422750..423793 (+) 1044 WP_011226968.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  AVT04_RS02230 (AVT04_02230) rcrQ 423891..425678 (-) 1788 WP_011225638.1 ABC transporter ATP-binding protein Regulator
  AVT04_RS02235 (AVT04_02235) rcrP 425691..427427 (-) 1737 WP_011226967.1 ABC transporter ATP-binding protein Regulator
  AVT04_RS02240 (AVT04_02240) rplL 428681..429049 (-) 369 WP_011225636.1 50S ribosomal protein L7/L12 -
  AVT04_RS02245 (AVT04_02245) rplJ 429124..429627 (-) 504 WP_011225635.1 50S ribosomal protein L10 -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 66541.69 Da        Isoelectric Point: 5.1433

>NTDB_id=143186 AVT04_RS02230 WP_011225638.1 423891..425678(-) (rcrQ) [Streptococcus thermophilus strain S9]
MKDNKKKTTHSSSFGRLWSYLQVYRFPLYLAIFLKIISVIMSVIEPVVIGLAITELTKNTLDIIKGVAGAHINVSYVGLV
LVFYLLRGLIYELASYYSNYFMTNAVQATVQDMRNEMIEKINRTSVSYFDKQQFGDLLGRFTSDVETVSNALQQSFLQVV
NAIFTLALVIGTVLYLNLQLGAVVVITIPISYFGARFIMSKSQPYFKQQADALGTLNGFVQENLTGFNVIKLFGREGRSL
DDFKEITEDLQKVGFKANFISGLMMPFLNGLSDLTYLIIAVLGGLQVLAGRLTIGNMQAFVQYVWQINQPIQNLTQLAGQ
LQSAKSSLDRIFQLMDEPDEANDATEVLEGDLTGQVIFNHVDFQYVADKPLIRDFNLEVNPGEMVAIVGPTGAGKSTIIN
LLMRFYDVTAGSISVDGHDIRNLSRKDYRKQFGMVLQDAWLFEGTIKENLRFGNLEATDEEIVEAAKAANVDHFIRTLPG
GYNMEINQESSNISLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMKTLMQGRTSFVIAHRLSTIQEADKI
LVLKDGQIIEQGNHESLLADKGFYYDLYNSQFAEK

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=143186 AVT04_RS02230 WP_011225638.1 423891..425678(-) (rcrQ) [Streptococcus thermophilus strain S9]
ATGAAGGATAATAAAAAGAAAACAACTCATTCCTCAAGTTTTGGCCGCCTTTGGTCATACTTGCAGGTTTATCGTTTCCC
ACTTTACTTAGCTATTTTCCTGAAAATTATTAGTGTCATCATGAGTGTTATTGAGCCAGTGGTCATTGGTTTAGCCATTA
CGGAACTGACTAAAAATACACTGGACATCATTAAGGGGGTAGCAGGTGCTCATATCAACGTGTCCTACGTTGGTTTAGTT
TTGGTCTTTTACCTCTTGCGTGGTCTCATCTATGAGTTGGCTTCTTACTATTCCAACTATTTTATGACCAATGCCGTGCA
AGCAACGGTTCAGGATATGCGAAATGAGATGATTGAGAAAATCAATCGTACCTCAGTGTCATACTTTGATAAGCAACAAT
TTGGAGACCTTTTGGGTCGCTTTACTAGTGACGTCGAGACAGTTTCAAATGCCTTGCAGCAGTCATTCTTGCAGGTTGTC
AACGCCATCTTTACTCTAGCCTTGGTTATTGGGACAGTGCTTTACCTTAATCTTCAGTTGGGAGCTGTGGTTGTTATCAC
TATTCCGATTTCTTACTTTGGTGCTCGCTTCATTATGAGTAAGTCTCAACCTTACTTTAAGCAGCAGGCTGATGCCCTAG
GTACTCTTAACGGTTTTGTTCAGGAAAATCTGACTGGTTTCAATGTGATTAAACTTTTTGGACGTGAGGGTAGATCTTTA
GACGACTTTAAAGAAATTACGGAAGACCTTCAAAAGGTAGGTTTTAAGGCCAATTTCATTTCAGGCCTCATGATGCCTTT
CCTTAATGGTTTATCTGACTTGACCTATCTAATTATTGCCGTCCTAGGTGGTTTGCAAGTCTTGGCTGGTCGCTTGACGA
TTGGTAATATGCAGGCTTTCGTTCAGTACGTTTGGCAGATTAATCAACCTATTCAGAACTTGACTCAGTTGGCTGGACAA
TTGCAGAGTGCTAAATCTTCCTTGGACCGTATTTTTCAACTGATGGATGAACCAGACGAGGCTAATGATGCTACTGAGGT
GCTTGAAGGAGATTTAACTGGTCAAGTTATCTTTAATCATGTGGACTTCCAGTATGTAGCTGATAAACCTTTGATTCGTG
ACTTTAATCTTGAGGTTAATCCTGGTGAAATGGTGGCTATTGTCGGTCCTACCGGTGCTGGAAAATCAACTATTATCAAT
CTTCTCATGCGTTTCTATGATGTTACTGCAGGTTCTATCTCGGTTGATGGTCATGATATACGCAACTTGTCGCGTAAAGA
TTATCGTAAACAGTTTGGTATGGTGCTTCAGGATGCTTGGCTCTTTGAAGGAACTATCAAGGAAAATCTTCGTTTTGGTA
ATCTTGAGGCAACTGATGAAGAAATTGTTGAAGCAGCGAAGGCTGCCAATGTGGATCACTTTATCCGTACGCTGCCTGGT
GGCTACAACATGGAAATAAACCAGGAATCAAGTAACATTTCACTGGGACAAAAGCAACTTTTGACCATAGCCCGTGCACT
TTTGGCTGACCCTAAAATCTTGATTTTGGACGAGGCAACCTCATCAGTTGATACCCGTCTGGAACTCTTGATTCAAAAAG
CTATGAAGACACTTATGCAAGGTCGAACAAGTTTTGTCATCGCTCACCGTTTATCAACAATCCAAGAAGCAGACAAGATT
TTGGTCCTTAAAGATGGACAAATCATCGAACAAGGGAACCATGAATCCCTCCTTGCAGATAAAGGTTTCTATTACGATTT
GTATAATAGTCAATTTGCAGAGAAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(373-521)

ABC transporter transmembrane region (ABC_membrane)

(29-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M5E9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.689

100

0.427