Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AVT04_RS01150 Genome accession   NZ_CP013939
Coordinates   214759..216507 (-) Length   582 a.a.
NCBI ID   WP_059257332.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S9     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 209759..221507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT04_RS01125 (AVT04_01125) dltD 210130..211398 (-) 1269 WP_011225797.1 D-alanyl-lipoteichoic acid biosynthesis protein DltD -
  AVT04_RS01130 (AVT04_01130) dltC 211391..211630 (-) 240 WP_002950439.1 D-alanine--poly(phosphoribitol) ligase subunit DltC -
  AVT04_RS01135 (AVT04_01135) dltB 211648..212895 (-) 1248 WP_002950436.1 D-alanyl-lipoteichoic acid biosynthesis protein DltB -
  AVT04_RS01140 (AVT04_01140) dltA 212892..214442 (-) 1551 WP_059257331.1 D-alanine--poly(phosphoribitol) ligase subunit DltA -
  AVT04_RS01145 (AVT04_01145) - 214451..214582 (-) 132 WP_002885174.1 teichoic acid D-Ala incorporation-associated protein DltX -
  AVT04_RS01150 (AVT04_01150) rcrQ 214759..216507 (-) 1749 WP_059257332.1 ABC transporter ATP-binding protein Regulator
  AVT04_RS01155 (AVT04_01155) - 216497..218236 (-) 1740 WP_059257333.1 ABC transporter ATP-binding protein -
  AVT04_RS01160 (AVT04_01160) - 218269..218880 (-) 612 WP_041827001.1 lysozyme family protein -
  AVT04_RS01165 (AVT04_01165) - 218882..219859 (-) 978 WP_011225791.1 nucleoid-associated protein -
  AVT04_RS01170 (AVT04_01170) glyA 219866..221116 (-) 1251 WP_011227085.1 serine hydroxymethyltransferase -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 65897.54 Da        Isoelectric Point: 9.2071

>NTDB_id=143178 AVT04_RS01150 WP_059257332.1 214759..216507(-) (rcrQ) [Streptococcus thermophilus strain S9]
MKARNNKSTLKRLCKDILSQRYLFALATVGTIVQVALTVYFPILLGDAVDAVLKMNAVFLMSRLIWQMLLLILANSAIQW
LNPLIYNRLIYSYSESLRERVMMKIHAIPFSYLDRQGTGDMVSRVTTDSDQLNNGLLMFFNQFFVGLLTIFVIIITMARL
DWFMMLLVLVMTPLSMLVTRFIARKSYQLYRNQTKWRGKQTQLIEESLTQEALIQILNAQDQMVRNFNEVNGKYANYSQG
AIFYSSAVNPATRFFNSLLYALITGVGAYRIMSGGTFTVGQLTTFLNYVTQYTKPFNDISSVLSELQSALACADRLYMIL
DEDEIPETGNAVLDEAEVQGHFQFDHVQFGYLQNKPLIKDLSIDIPAASTVAIVGPTGAGKSTLINLLMRFYDLDKGQIL
LDGRDITYYTRESLRKQIGMVLQETWLKVATIHDNIAYGNPKASREEVVAAAKAANADFFIKQLPLGYDTFLRDAGQSLS
QGQRQLLTIARIFVNVPKILILDEATSSIDTRTELLIQEAFAKLMKGRTSFIIAHRLSTIENADLILVMNNGDIVEHGTH
NQLMRTKGMYYRMQTAQKTQNN

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=143178 AVT04_RS01150 WP_059257332.1 214759..216507(-) (rcrQ) [Streptococcus thermophilus strain S9]
ATGAAGGCTAGAAATAACAAGTCAACGCTTAAACGATTATGTAAAGATATCCTAAGTCAGCGTTACCTCTTTGCCTTAGC
AACTGTTGGGACCATTGTTCAAGTTGCTTTGACTGTCTACTTCCCTATTTTGCTTGGCGATGCAGTAGATGCTGTTCTTA
AGATGAATGCTGTCTTTTTGATGTCACGTTTGATTTGGCAGATGCTTTTGCTTATCTTAGCTAATAGTGCAATCCAGTGG
CTTAACCCTTTGATTTATAATCGATTGATTTATTCTTATAGCGAAAGTTTACGTGAACGAGTCATGATGAAAATTCATGC
TATTCCATTCAGTTATCTTGATCGTCAAGGAACTGGAGACATGGTTAGCCGTGTGACTACAGATAGTGACCAATTGAATA
ATGGTCTCCTTATGTTCTTTAATCAATTTTTCGTTGGACTTTTGACCATCTTTGTCATAATCATTACCATGGCTCGCTTA
GACTGGTTCATGATGCTCTTAGTTCTAGTGATGACACCTTTATCAATGCTTGTGACTCGTTTCATTGCTAGGAAGAGTTA
TCAACTCTATCGCAATCAAACCAAGTGGAGAGGCAAACAGACTCAGCTGATCGAAGAAAGTCTAACTCAGGAAGCTCTGA
TACAAATTCTAAATGCTCAAGACCAGATGGTTCGCAATTTTAATGAGGTTAATGGTAAGTATGCTAACTATTCACAGGGA
GCCATCTTTTACTCGTCAGCGGTTAACCCAGCTACACGTTTTTTTAATAGCTTGCTTTACGCTCTCATTACAGGTGTTGG
TGCCTATCGCATCATGTCGGGAGGCACATTTACAGTGGGACAATTGACTACCTTCCTAAACTATGTCACTCAGTATACCA
AACCTTTTAATGACATTTCATCTGTCCTATCTGAACTTCAAAGTGCTTTAGCCTGTGCTGATCGTCTATATATGATTTTA
GATGAAGATGAAATACCAGAAACGGGAAATGCGGTTTTGGACGAAGCAGAAGTTCAGGGACATTTTCAATTTGATCATGT
TCAATTTGGCTATTTGCAAAATAAACCTCTTATCAAGGATTTGAGTATTGATATTCCTGCTGCGAGTACCGTTGCTATTG
TTGGCCCAACAGGAGCAGGAAAATCTACTTTGATTAATCTTCTCATGCGTTTTTATGATTTGGATAAGGGTCAAATTTTG
CTAGACGGTCGAGATATTACGTATTATACCCGTGAGAGTCTTCGCAAGCAGATTGGGATGGTTCTACAAGAAACTTGGCT
TAAAGTAGCTACTATCCATGATAATATTGCCTATGGCAATCCAAAAGCTAGTCGAGAGGAAGTAGTTGCAGCAGCCAAAG
CAGCTAATGCTGATTTCTTTATTAAACAATTACCTCTAGGCTATGACACTTTCTTGAGAGATGCAGGGCAATCTCTTTCA
CAAGGTCAACGTCAGTTACTAACTATTGCTCGTATATTTGTCAATGTTCCTAAAATTCTTATTTTGGATGAAGCAACATC
AAGTATTGATACCCGTACGGAGCTCCTTATTCAAGAAGCTTTTGCTAAACTGATGAAAGGTCGGACGAGTTTCATTATTG
CTCATAGATTATCTACCATTGAGAATGCAGACCTTATTTTGGTAATGAATAATGGTGATATCGTTGAACATGGAACACAT
AATCAATTAATGAGGACTAAGGGAATGTACTATCGTATGCAGACAGCCCAAAAAACACAAAATAATTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(25-295)

ABC transporter (ABC_tran)

(359-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

37.285

100

0.373

Multiple sequence alignment