Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   AV644_RS03980 Genome accession   NZ_CP013908
Coordinates   715722..716507 (+) Length   261 a.a.
NCBI ID   WP_000825437.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBS-M002     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 710722..721507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AV644_RS11310 (AV644_03810) - 711850..712644 (+) 795 WP_001868413.1 ABC transporter permease -
  AV644_RS11165 (AV644_03815) - 712745..712873 (+) 129 WP_000962057.1 hypothetical protein -
  AV644_RS11170 (AV644_03820) - 712882..713076 (+) 195 WP_000560510.1 hypothetical protein -
  AV644_RS03970 (AV644_03825) - 713288..713959 (+) 672 WP_000462434.1 ATP-binding cassette domain-containing protein -
  AV644_RS03975 (AV644_03830) - 714016..715461 (-) 1446 WP_000750942.1 FAD/NAD(P)-binding protein -
  AV644_RS03980 (AV644_03835) endA 715722..716507 (+) 786 WP_000825437.1 DNA/RNA non-specific endonuclease Machinery gene
  AV644_RS03985 (AV644_03840) - 716585..717223 (-) 639 WP_000478529.1 VTT domain-containing protein -
  AV644_RS03990 (AV644_03845) - 717440..718096 (+) 657 WP_000121094.1 ABC transporter ATP-binding protein -
  AV644_RS03995 (AV644_03850) - 718093..718866 (+) 774 WP_000011926.1 ABC transporter permease -
  AV644_RS04000 (AV644_03855) - 719030..719848 (+) 819 WP_000600997.1 hypothetical protein -
  AV644_RS04005 (AV644_03860) - 719885..720769 (-) 885 WP_000354837.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29408.82 Da        Isoelectric Point: 8.9989

>NTDB_id=143035 AV644_RS03980 WP_000825437.1 715722..716507(+) (endA) [Streptococcus agalactiae strain GBS-M002]
MKRLHKLFITVIATLGMLGVMTFGLPTQPQNVTPIVHADVNSSVDTSQEFQNNLKNAIGNLPFQYVNGIYELNNNQTNLN
ADVNVKAYVQNTIDNQQRPSTANAMLDRTIRQYQNRRDTTLPDANWKPLGWHQVATNDHYGHAVDKGHLIAYALAGNFKG
WDASVSNPQNVVTQTAHSNQSNQKINRGQNYYESLVRKAVDQNKRVRYRVTPLYRNDTDLVPFAMHLEAKSQDGTLEFNV
AIPNTQASYTMDYATGEITLN

Nucleotide


Download         Length: 786 bp        

>NTDB_id=143035 AV644_RS03980 WP_000825437.1 715722..716507(+) (endA) [Streptococcus agalactiae strain GBS-M002]
ATGAAAAGATTACATAAACTGTTTATAACCGTAATTGCTACATTAGGTATGTTGGGGGTAATGACCTTTGGTCTTCCAAC
GCAGCCGCAAAACGTAACACCGATAGTACATGCTGATGTCAATTCATCTGTTGATACGAGCCAGGAATTTCAAAATAATT
TAAAAAATGCTATTGGTAACCTACCATTTCAATATGTTAATGGTATTTATGAATTAAATAATAATCAAACAAATTTAAAT
GCTGATGTCAATGTTAAAGCGTATGTTCAAAATACAATTGACAATCAACAAAGACCATCAACTGCTAATGCAATGCTTGA
TAGAACCATTCGTCAATATCAAAATCGCAGAGATACCACTCTTCCCGATGCAAATTGGAAACCATTAGGTTGGCATCAAG
TAGCTACTAATGACCATTATGGGCATGCAGTCGACAAGGGGCATTTAATTGCCTATGCTTTAGCTGGAAATTTCAAAGGT
TGGGATGCTTCCGTGTCAAATCCTCAAAATGTTGTCACACAAACAGCTCATTCCAACCAATCAAATCAAAAAATCAATCG
TGGACAAAATTATTATGAAAGCTTAGTTCGTAAGGCGGTTGACCAAAACAAACGTGTTCGTTACCGTGTAACTCCATTGT
ACCGTAATGATACTGATTTAGTTCCATTTGCAATGCACCTAGAAGCTAAATCACAAGATGGCACATTAGAATTTAATGTT
GCTATTCCAAACACACAAGCATCATACACTATGGATTATGCAACAGGAGAAATAACACTAAATTAA

Domains

Predicted by InterProScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(77-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

52.02

75.862

0.395
  endA Streptococcus pneumoniae D39

52.02

75.862

0.395
  endA Streptococcus pneumoniae R6

52.02

75.862

0.395
  endA Streptococcus pneumoniae TIGR4

52.02

75.862

0.395

Multiple sequence alignment