Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   WR51_RS19300 Genome accession   NZ_CP011153
Coordinates   3917079..3917858 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus cereus strain CMCC P0011     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3912079..3922858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WR51_RS19275 (WR51_19760) uppS 3912827..3913603 (-) 777 WP_000971296.1 isoprenyl transferase -
  WR51_RS19280 (WR51_19765) frr 3913689..3914246 (-) 558 WP_000531505.1 ribosome recycling factor -
  WR51_RS19285 (WR51_19770) pyrH 3914249..3914971 (-) 723 WP_000042669.1 UMP kinase -
  WR51_RS19290 (WR51_19775) tsf 3915038..3915925 (-) 888 WP_001018577.1 translation elongation factor Ts -
  WR51_RS19295 (WR51_19780) rpsB 3916029..3916730 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  WR51_RS19300 (WR51_19785) codY 3917079..3917858 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  WR51_RS19305 (WR51_19790) hslU 3917936..3919327 (-) 1392 WP_000550085.1 ATP-dependent protease ATPase subunit HslU -
  WR51_RS19310 (WR51_19795) hslV 3919350..3919892 (-) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  WR51_RS19315 (WR51_19800) xerC 3919935..3920834 (-) 900 WP_001101245.1 tyrosine recombinase XerC -
  WR51_RS19320 (WR51_19805) trmFO 3920900..3922204 (-) 1305 WP_000213006.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=142943 WR51_RS19300 WP_000421290.1 3917079..3917858(-) (codY) [Bacillus cereus strain CMCC P0011]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=142943 WR51_RS19300 WP_000421290.1 3917079..3917858(-) (codY) [Bacillus cereus strain CMCC P0011]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCGGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGTGGTGAGCGTCTAGGTACTTTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGACGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGCATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGTGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment