Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FORC13_RS07210 Genome accession   NZ_CP011145
Coordinates   1308454..1309233 (+) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus cereus strain FORC_013     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1303454..1314233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC13_RS07190 (FORC13_1319) trmFO 1304108..1305412 (+) 1305 WP_000213003.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FORC13_RS07195 (FORC13_1320) xerC 1305478..1306377 (+) 900 WP_001101243.1 tyrosine recombinase XerC -
  FORC13_RS07200 (FORC13_1321) hslV 1306420..1306962 (+) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  FORC13_RS07205 (FORC13_1322) hslU 1306985..1308376 (+) 1392 WP_000550078.1 ATP-dependent protease ATPase subunit HslU -
  FORC13_RS07210 (FORC13_1323) codY 1308454..1309233 (+) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FORC13_RS07215 (FORC13_1324) rpsB 1309581..1310282 (+) 702 WP_000111485.1 30S ribosomal protein S2 -
  FORC13_RS07220 (FORC13_1325) tsf 1310386..1311273 (+) 888 WP_001018578.1 translation elongation factor Ts -
  FORC13_RS07225 (FORC13_1326) pyrH 1311340..1312062 (+) 723 WP_000042668.1 UMP kinase -
  FORC13_RS07230 (FORC13_1327) frr 1312065..1312622 (+) 558 WP_000531501.1 ribosome recycling factor -
  FORC13_RS07235 (FORC13_1328) uppS 1312708..1313484 (+) 777 WP_000971296.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=142729 FORC13_RS07210 WP_000421290.1 1308454..1309233(+) (codY) [Bacillus cereus strain FORC_013]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=142729 FORC13_RS07210 WP_000421290.1 1308454..1309233(+) (codY) [Bacillus cereus strain FORC_013]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment