Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   FORC13_RS04280 Genome accession   NZ_CP011145
Coordinates   778282..780618 (+) Length   778 a.a.
NCBI ID   WP_059303433.1    Uniprot ID   A0A9X7GMK0
Organism   Bacillus cereus strain FORC_013     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 773282..785618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC13_RS04260 (FORC13_0747) - 774688..775104 (+) 417 WP_000704116.1 Rrf2 family transcriptional regulator -
  FORC13_RS04265 (FORC13_0748) - 775140..776285 (+) 1146 WP_000439881.1 cysteine desulfurase family protein -
  FORC13_RS04270 (FORC13_0749) mnmA 776302..777417 (+) 1116 WP_001038010.1 tRNA 2-thiouridine(34) synthase MnmA -
  FORC13_RS04275 (FORC13_0750) - 777527..778186 (+) 660 WP_000066409.1 tetratricopeptide repeat protein -
  FORC13_RS04280 (FORC13_0751) recD2 778282..780618 (+) 2337 WP_059303433.1 ATP-dependent RecD-like DNA helicase Machinery gene
  FORC13_RS04285 (FORC13_0752) - 780746..780934 (+) 189 WP_000469281.1 hypothetical protein -
  FORC13_RS04290 (FORC13_0753) - 780953..781081 (+) 129 WP_001053553.1 YrzQ family protein -
  FORC13_RS04295 (FORC13_0754) - 781128..781340 (-) 213 WP_000242535.1 hypothetical protein -
  FORC13_RS04300 (FORC13_0755) - 781517..782584 (+) 1068 WP_000793128.1 AI-2E family transporter -
  FORC13_RS04305 (FORC13_0756) - 782629..782973 (-) 345 WP_000209577.1 PH domain-containing protein -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87464.93 Da        Isoelectric Point: 5.2601

>NTDB_id=142721 FORC13_RS04280 WP_059303433.1 778282..780618(+) (recD2) [Bacillus cereus strain FORC_013]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYMVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLVRETMSLLNNQEGRVTEEDIIGCIETMQSEGKVIIEEERVYLATLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLNVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFISCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQQVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=142721 FORC13_RS04280 WP_059303433.1 778282..780618(+) (recD2) [Bacillus cereus strain FORC_013]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTATGACGAAAAGAAAGTAATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACATTGACAGGTCATTTTAAGGACCATCCAAAGTATGGA
AAACAATATATGGTTGAAACATTTAAAAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAACGTACAGCTGAAAAAATTGTGGACCATCTCGGAGAACATGCTATTTCTAAAATTATGGATG
ACCCTGAGGCGTTAAATGGTGTTGTTAATAAACAAAAGGCTCAGGAAATATATGAGACAATTGTTGAACATCAAGGATTA
GAGAAAGTAATGAGCTTTTTAAATGGCTACGGTTTTGGAACGAAACTTTCTATTAAGATTTACCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCGTATCAACTTATTGAAGAAGTGGACGGGATTGGTTTTGGAAGAGCGGATGATA
TAGGGCGTGCGTTAGGGATATCGGGTAATCATGACGACCGTGTACGAGCGGGATGTTTTTACACATTAGAGAATGTCTCA
TTACAACTTGGTCATGTTTATATGAGGAAAGATCAACTTGTAAGAGAAACGATGTCACTTTTAAACAATCAAGAAGGAAG
AGTGACTGAGGAAGATATTATAGGTTGTATTGAAACGATGCAAAGTGAAGGGAAAGTCATCATAGAAGAAGAACGAGTGT
ATTTAGCGACGTTATTCTACTCTGAAAAAGGTGTTGTAAAGTCTATTCGCAGGCTTATGAATCAAGAAGAAACACCTTCA
TTTCCAGAAGCGGAAGTGTTAAAAACGTTAGGTGAAATTGAAGAACAACTGAACGTACAATATGCACCGTTTCAGCAAGA
AGCAATTCAAACGGCACTTCATAAACCGATGATGTTATTGACAGGTGGACCAGGAACAGGGAAAACAACAGTTATTAAAG
GGATTGTTGAAATGTATGCGTCACTTCACGGATTATCGTTAAATCCGAATGAATACAGTGATGATAATCCATTTCCAATA
CTATTAACAGCTCCAACAGGAAGAGCAGCGAAGCGGATGAGTGAATCGACAGGACTTCCAGCTTGCACAATTCACCGTTT
ACTTGGTTGGACGCCAGAAGGATCTTTCCAGCGTAATGAAACGGATCCTGTCCAAGGTAAGCTCCTTATTATCGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTATTTAAGTCGTTGCCGACGAATATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAGTTGCCATCTGTAGGACCTGGACAAGTATTAAAAGATTTATTAAATGCAGGCGCAGTTCCGACAGTGAAGCT
TACTGAAATTTATCGTCAAGCGGAAGGCTCATCAGTGATTCAACTTGCCCATGCGATAAAAAATGGAACTCTACCACCAG
ATTTAGCGCAAAACCAAAAAGATCGTTCGTTTATCAGCTGTACAGGGGCTCAAATTGTTGAGGTTGTGAAAAAAGTTTGC
GAAAATGCTAAAACAAAAGGCTTTAGTGCAAGGGATGTTCAAGTATTAGCACCGATGTACCGCGGGCCTGCTGGTATTAA
TGTATTAAACGAAGCGCTGCAACAAGTATTTAATCCGAAGAGGGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTGT
ACCGAAGAGGTGATAAAGTACTGCAACTCGTGAATCAGCCGGAGAGCCAAGTGTTTAATGGTGATATTGGGGAAATTGTT
TCGGTGTTTTATGCAAAAGAAAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACGTATAC
GAAGCCCGATTTAAATCAAATTACGCATGCATATTGTTGTTCCATTCATAAATCACAAGGTAGTGAATTTCCGATTGTTA
TTATGCCAATCGTGAAAAGTTACAACCGTATGTTACGTCGTAATTTAATTTACACGGGTATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGCAGCTTTCCAATCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACAACTTTAGC
TAGTCGCTTGCAAGAATCACAAGGAGAAGTACAGATGGTCACAGTTAATGGCGAGGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(341-548)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.016

100

0.58

Multiple sequence alignment