Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AU077_RS05655 Genome accession   NZ_CP013688
Coordinates   1129629..1131506 (-) Length   625 a.a.
NCBI ID   WP_058621728.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain ICDDRB-NRC-S1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1124629..1136506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AU077_RS05635 (AU077_05635) - 1125549..1126586 (-) 1038 Protein_1149 dihydrolipoamide acetyltransferase -
  AU077_RS12165 - 1126776..1126925 (-) 150 Protein_1150 biotin/lipoyl-containing protein -
  AU077_RS05640 (AU077_05640) - 1126958..1127962 (-) 1005 WP_058621727.1 alpha-ketoacid dehydrogenase subunit beta -
  AU077_RS05645 (AU077_05645) - 1127994..1128962 (-) 969 WP_014294362.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  AU077_RS05650 (AU077_05650) - 1129095..1129511 (-) 417 Protein_1153 cupin domain-containing protein -
  AU077_RS05655 (AU077_05655) rcrQ 1129629..1131506 (-) 1878 WP_058621728.1 ABC transporter ATP-binding protein Regulator
  AU077_RS12170 (AU077_05660) - 1131506..1133247 (-) 1742 Protein_1155 ABC transporter ATP-binding protein -
  AU077_RS05665 (AU077_05665) - 1133240..1133686 (-) 447 WP_014294360.1 MarR family winged helix-turn-helix transcriptional regulator -
  AU077_RS05670 (AU077_05670) - 1133920..1135839 (-) 1920 WP_058621729.1 ABC-F family ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 70311.11 Da        Isoelectric Point: 7.3150

>NTDB_id=141946 AU077_RS05655 WP_058621728.1 1129629..1131506(-) (rcrQ) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
MAQIKKEINKQDTLKRVLAYVLKNYKWRFLLVLVLILVTALCMVRFSLFMQTLIDSYITPLLAAKNPDFSGLAHAIFQLI
IIGIIGVLSSYTYNRLMVYVGQGTMRRIRIDLFTHMERLPIKYFDTHAHGDIMSIYTNDVDTLRQLLSQSIPQVVNSFFS
IVVTFKSMLIFNVPLSMLSLFMVVILLTVARKIASQSSKHFHNQQNDLGRVNGFIEEMMDGQKVVKVFNHEERAKEDFRK
INQQLRYSATNANIYANILMPVSANIGHISYVLCAMLGATLALHGYAGLTLGTLVSFLVLNRSFTNPITQISQQINSVIM
AMAGADRVFNLLDAEVEIDEGYVELVNATEDAAGNLQEVEETTGMWAWKHPHEDGTVTYHKQEGRVTFSDLTFGYNDDKM
VLHDINLFAEPGQKIAFVGSTGAGKTTITNLINRFYDIQEGKIHYDGINIRKIKKADLRRSLRIVLQDTHLFTGTVMDNI
RYGRLNATDDECIAAAKLANAHDFIKRWPEGYDTILTGDGSNISQGQRQLLAIARAAVANPPALILDEATSSIDTRTEVH
VQEGMDALMKGRTTFVIAHRLSTVRNADCIMVLEQGHIIERGNHDELIAQKGRYYQLYTGNAISE

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=141946 AU077_RS05655 WP_058621728.1 1129629..1131506(-) (rcrQ) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
ATGGCTCAAATCAAAAAAGAAATTAATAAACAAGATACGCTAAAACGTGTGTTGGCTTATGTCTTGAAAAACTATAAATG
GCGCTTCTTGCTAGTATTGGTTTTGATTTTAGTAACAGCGCTTTGTATGGTACGCTTTAGTTTGTTCATGCAAACATTGA
TTGATAGTTATATTACACCTCTTTTAGCTGCTAAAAATCCAGATTTTTCAGGGTTAGCGCACGCTATTTTTCAGTTAATC
ATTATTGGTATCATTGGTGTTCTAAGTTCTTACACTTATAACCGTTTGATGGTTTATGTTGGACAAGGAACAATGCGTCG
TATTCGTATTGATTTGTTCACTCATATGGAACGCTTGCCAATCAAATATTTTGATACACATGCCCACGGTGATATCATGT
CTATCTATACTAACGACGTTGATACACTTCGTCAGTTGCTTAGCCAAAGTATTCCGCAAGTGGTTAATTCATTCTTTTCA
ATCGTGGTGACTTTTAAAAGCATGCTTATTTTTAACGTGCCATTGTCAATGTTATCACTATTTATGGTTGTGATTTTGTT
AACTGTTGCGCGTAAAATCGCTTCGCAATCGTCTAAACATTTCCATAACCAACAAAATGACCTTGGTCGTGTCAATGGTT
TCATTGAAGAAATGATGGACGGTCAAAAAGTGGTTAAAGTTTTCAATCACGAAGAACGTGCTAAAGAAGATTTCCGAAAA
ATCAATCAACAACTCCGCTATTCTGCCACAAATGCCAATATCTATGCTAATATTTTGATGCCAGTATCAGCTAACATTGG
ACATATTTCCTATGTACTTTGTGCCATGCTTGGGGCAACCCTAGCACTTCATGGTTATGCTGGATTGACTTTGGGAACAT
TGGTTTCTTTCCTAGTCCTTAACCGTAGTTTTACAAATCCGATTACACAAATCAGTCAACAAATCAACTCAGTTATCATG
GCGATGGCTGGTGCTGACCGTGTCTTTAACCTACTTGATGCCGAAGTGGAAATAGATGAAGGTTATGTTGAATTGGTAAA
TGCTACTGAGGACGCTGCTGGTAATCTTCAAGAAGTTGAAGAAACAACTGGTATGTGGGCTTGGAAACATCCACACGAAG
ACGGCACTGTGACTTATCACAAGCAAGAAGGTCGTGTAACCTTCTCAGATCTAACCTTTGGTTATAACGATGATAAAATG
GTTTTACATGACATTAATTTGTTTGCGGAACCTGGTCAAAAAATTGCCTTTGTTGGGTCAACTGGTGCTGGTAAAACAAC
CATTACAAACTTGATTAATCGTTTTTACGATATTCAAGAAGGTAAGATTCATTACGACGGTATTAATATTCGTAAAATCA
AAAAAGCTGATCTTCGTCGTAGTTTAAGGATTGTATTGCAAGATACGCACCTCTTTACAGGAACGGTTATGGATAATATC
CGTTACGGACGTTTGAATGCGACTGATGACGAATGTATTGCTGCGGCTAAGTTAGCTAATGCACATGATTTCATTAAACG
TTGGCCAGAAGGTTACGATACAATTTTGACGGGTGACGGAAGTAATATATCTCAAGGACAACGTCAATTGCTTGCTATTG
CACGTGCAGCCGTGGCAAATCCACCTGCTTTGATTTTGGATGAAGCAACATCATCAATCGATACGCGTACCGAAGTTCAC
GTTCAAGAAGGTATGGATGCGTTGATGAAGGGTCGTACAACCTTTGTTATCGCTCACCGCTTGTCAACAGTTCGCAATGC
GGATTGTATCATGGTTCTTGAACAAGGACATATCATCGAACGTGGTAACCACGACGAATTGATTGCGCAAAAAGGACGTT
ATTACCAACTTTACACAGGTAATGCCATTAGCGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(402-551)

ABC transporter transmembrane region (ABC_membrane)

(30-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.355

99.2

0.39