Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   VC76_RS06685 Genome accession   NZ_CP011015
Coordinates   1310594..1311109 (-) Length   171 a.a.
NCBI ID   WP_002838045.1    Uniprot ID   -
Organism   Campylobacter coli strain FB1     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1305594..1316109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VC76_RS06670 (VC76_06710) - 1305677..1307398 (-) 1722 WP_021033669.1 flagellin A -
  VC76_RS06675 (VC76_06715) - 1307493..1309343 (-) 1851 WP_002838041.1 motility associated factor glycosyltransferase family protein -
  VC76_RS06680 (VC76_06720) - 1309353..1310594 (-) 1242 WP_002838043.1 DUF2920 family protein -
  VC76_RS06685 (VC76_06725) ctsG 1310594..1311109 (-) 516 WP_002838045.1 type II secretion system protein Machinery gene
  VC76_RS06690 (VC76_06730) tsaD 1311113..1312120 (-) 1008 WP_002777752.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  VC76_RS09500 - 1312117..1313510 (-) 1394 Protein_1295 M99 family carboxypeptidase catalytic domain-containing protein -
  VC76_RS06700 (VC76_06745) dxr 1313507..1314583 (-) 1077 WP_045243693.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  VC76_RS06705 (VC76_06750) - 1314580..1315305 (-) 726 WP_002822456.1 phosphatidate cytidylyltransferase -
  VC76_RS06710 (VC76_06755) - 1315314..1315652 (-) 339 WP_002806264.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18693.49 Da        Isoelectric Point: 5.7789

>NTDB_id=141483 VC76_RS06685 WP_002838045.1 1310594..1311109(-) (ctsG) [Campylobacter coli strain FB1]
MKRAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFIDRADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=141483 VC76_RS06685 WP_002838045.1 1310594..1311109(-) (ctsG) [Campylobacter coli strain FB1]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTGAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTCAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAGATAGAGCGGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGCAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.398

100

0.924

Multiple sequence alignment