Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   UP17_RS17050 Genome accession   NZ_CP011008
Coordinates   3650777..3653185 (-) Length   802 a.a.
NCBI ID   WP_061464162.1    Uniprot ID   -
Organism   Peribacillus simplex strain SH-B26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3645777..3658185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UP17_RS17025 (UP17_17020) - 3647214..3648290 (-) 1077 WP_061464158.1 AI-2E family transporter -
  UP17_RS17030 (UP17_17025) - 3648518..3648706 (-) 189 WP_089361771.1 hypothetical protein -
  UP17_RS17035 (UP17_17030) - 3648723..3649187 (-) 465 WP_081108865.1 PRC-barrel domain-containing protein -
  UP17_RS17040 (UP17_17035) - 3649325..3650095 (-) 771 WP_061464160.1 TPM domain-containing protein -
  UP17_RS17045 (UP17_17040) - 3650095..3650661 (-) 567 WP_061464161.1 LemA family protein -
  UP17_RS17050 (UP17_17045) recD2 3650777..3653185 (-) 2409 WP_061464162.1 ATP-dependent RecD-like DNA helicase Machinery gene
  UP17_RS17055 (UP17_17050) - 3653222..3653887 (-) 666 WP_061466152.1 tetratricopeptide repeat protein -
  UP17_RS17060 (UP17_17055) mnmA 3654012..3655127 (-) 1116 WP_061464163.1 tRNA 2-thiouridine(34) synthase MnmA -
  UP17_RS17065 (UP17_17060) - 3655157..3656302 (-) 1146 WP_061464164.1 cysteine desulfurase family protein -
  UP17_RS17070 (UP17_17065) - 3656363..3656782 (-) 420 WP_061464165.1 Rrf2 family transcriptional regulator -
  UP17_RS17075 (UP17_17070) - 3657136..3658116 (+) 981 WP_061464166.1 nuclease-related domain-containing protein -

Sequence

Protein


Download         Length: 802 a.a.        Molecular weight: 90596.21 Da        Isoelectric Point: 4.7981

>NTDB_id=141386 UP17_RS17050 WP_061464162.1 3650777..3653185(-) (recD2) [Peribacillus simplex strain SH-B26]
MSQQDSLDLFSEEKMFMKGSHLVTIFHNEENMYSVVRIRVHETNLNYEEKEAVVTGYFPRMHEDEIYIFYGAMKEHPRFG
LQFHVEHFRKDLPQSKEGIVSYLSGDLFKGIGKKTAESIVDTLGEKAISKILAQPSLLDDIPKLSGEKAKGLYDTLVEHQ
GLEQVMIALNQYGFGPQLSMKIYQLYKQDTITMVQGNPYKLVEDIEGIGFGRADELGHQLGISGSHPDRIKAACLYTLES
QCLQDGNIYIEAEQLLEAVKRLLEENKRDRIEFTNISSEIIELTEERKIVVEDQRIYPPSLYYSEKGIVTNIKRLLAQTE
YEDQFPESEFLLALGKLEERLNVSYASAQKEAIQTALQSPMLILTGGPGTGKTTVIKGIVELYAELHGVSMDINDYKKEG
SDPFPFVLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFSHDEDNQLDGRIVIIDEVSMVDTWLANQLFKALPENVQ
VILVGDEDQLPSVGPGQVLKDLLASNCVPTVSLEHIYRQADGSSIIELAHGIKKGKLPDDVTKQQEDRSFIRCQTGQIAQ
VIEKVVANARTKGFTARDIQVLAPMYRGPAGIDALNKMLQEVFNSNADEKRREIKFGDVIYRTGDKVLQLVNQPEEGVFN
GDMGEIVSILFAKENTDHVDKVIISFEGIEVTYTKQDLNQITHAYCCSIHKSQGSEFPIVILPVVRSYYRMLRRNLLYTA
ITRSKNFLILCGEEDAFRLGIERNDEMRRKTTLREKLREILSEEDIPVEKGEVQEREASYLEIFTNADPMIGMEDVTPYD
FM

Nucleotide


Download         Length: 2409 bp        

>NTDB_id=141386 UP17_RS17050 WP_061464162.1 3650777..3653185(-) (recD2) [Peribacillus simplex strain SH-B26]
TTGAGCCAGCAAGATTCATTGGATTTGTTTTCAGAAGAGAAAATGTTCATGAAAGGAAGTCATTTAGTGACGATCTTTCA
TAATGAAGAAAATATGTACTCGGTTGTAAGAATTCGTGTGCATGAAACGAATCTGAATTATGAAGAGAAGGAAGCTGTCG
TGACAGGTTACTTTCCAAGGATGCATGAGGATGAGATCTATATTTTTTATGGGGCGATGAAGGAACATCCGCGTTTTGGC
CTTCAATTTCATGTAGAGCATTTTCGCAAGGATTTGCCCCAATCAAAAGAAGGCATCGTCAGTTATTTATCCGGTGACCT
GTTCAAAGGCATTGGGAAAAAAACAGCCGAGAGCATTGTTGATACACTAGGGGAAAAGGCAATTTCCAAAATTCTGGCTC
AGCCTTCGTTACTTGATGATATCCCGAAGCTATCCGGGGAAAAGGCAAAGGGCCTCTATGATACATTAGTCGAGCATCAA
GGTCTGGAGCAGGTAATGATCGCCCTGAATCAATATGGCTTCGGTCCGCAGCTGTCGATGAAGATTTATCAATTGTATAA
ACAGGATACGATCACGATGGTTCAGGGAAATCCATATAAGCTCGTAGAGGATATTGAAGGGATCGGTTTTGGACGGGCGG
ATGAGCTTGGGCATCAGCTTGGCATTTCCGGCAGCCATCCCGACCGAATCAAGGCTGCGTGCTTGTATACACTTGAATCA
CAATGCCTTCAGGATGGAAATATCTACATAGAAGCCGAGCAGCTTTTGGAAGCGGTCAAACGATTGCTTGAGGAAAATAA
ACGGGATCGCATAGAGTTCACGAACATTTCCTCGGAAATAATCGAATTGACGGAAGAGAGAAAAATCGTTGTCGAGGATC
AACGAATTTATCCGCCTTCACTTTACTATTCTGAAAAGGGAATTGTTACGAACATCAAGCGGCTGCTCGCACAAACCGAG
TATGAAGACCAGTTCCCGGAATCGGAATTTTTACTGGCCCTTGGGAAGCTGGAAGAGCGTCTAAATGTTTCTTATGCCTC
AGCTCAAAAAGAGGCGATACAAACAGCCCTGCAGTCGCCCATGTTGATCTTGACGGGGGGACCCGGTACTGGGAAGACGA
CGGTAATCAAAGGGATTGTTGAGCTATATGCAGAGCTGCATGGTGTATCCATGGACATTAATGATTATAAAAAAGAGGGA
AGCGATCCATTTCCATTCGTTCTTGCGGCTCCTACTGGCCGTGCAGCGAAACGAATGGCCGAATCGACTGGACTCCCCGC
TGTTACGATCCACCGTTTGCTGGGGTGGAACGGGAGTGAAGGCTTTTCCCATGATGAGGATAATCAGTTGGATGGCCGGA
TCGTGATTATCGATGAGGTTTCCATGGTGGATACATGGCTGGCCAATCAATTGTTTAAGGCTTTGCCGGAAAATGTCCAA
GTGATATTGGTAGGTGATGAAGATCAACTGCCATCGGTTGGCCCTGGGCAGGTTTTAAAGGATTTGCTTGCGTCGAATTG
TGTGCCTACTGTCAGTCTGGAACATATTTATCGTCAAGCTGATGGCTCATCGATCATTGAATTAGCCCATGGTATCAAAA
AAGGAAAGCTTCCGGATGATGTGACGAAGCAGCAAGAAGATCGATCGTTCATTCGCTGCCAGACCGGGCAAATCGCTCAA
GTAATCGAAAAAGTGGTTGCGAATGCGAGGACGAAGGGTTTCACGGCCAGGGATATACAGGTGCTGGCTCCCATGTATAG
AGGGCCTGCCGGGATTGATGCACTGAATAAAATGCTTCAGGAAGTGTTCAATAGCAATGCGGATGAAAAGCGGCGGGAAA
TTAAATTCGGAGACGTGATATACAGAACGGGAGATAAGGTGCTTCAACTGGTGAACCAGCCAGAGGAGGGTGTCTTTAAC
GGCGATATGGGTGAAATCGTGTCCATATTGTTCGCTAAGGAAAATACCGATCATGTCGATAAAGTAATCATATCGTTCGA
GGGAATCGAAGTGACATACACGAAACAGGACTTGAACCAGATTACACATGCGTATTGCTGCTCTATCCATAAGTCGCAGG
GAAGCGAGTTTCCCATTGTCATTTTACCTGTAGTGAGAAGTTATTATCGGATGCTCCGCCGTAATTTATTGTATACGGCG
ATTACCCGCAGTAAAAATTTCTTGATCCTTTGCGGTGAAGAAGATGCATTCCGTCTAGGGATTGAGCGTAATGATGAGAT
GCGCCGGAAAACGACTTTGCGTGAAAAGCTGCGGGAGATTTTGAGTGAAGAAGATATTCCGGTGGAAAAGGGAGAGGTGC
AAGAGCGTGAGGCAAGTTATCTTGAAATCTTCACGAATGCTGACCCGATGATCGGGATGGAGGATGTCACGCCTTATGAT
TTTATGTAG

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

AAA domain (AAA_30)

(345-555)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.893

100

0.62

Multiple sequence alignment