Detailed information NTG0141338

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: UP12_RS12015
• Genome accession: NZ_CP011007
• Coordinates: 2403616..2406000 (-)
• Length: 794 a.a.
• NCBI ID: WP_061408771.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain SH-B9
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2398616..2411000

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UP12_RS11985 (UP12_11995)	-	2399671..2400399 (+)	729	WP_058014574.1	amino acid ABC transporter ATP-binding protein	-
UP12_RS11990 (UP12_12000)	-	2400414..2401223 (+)	810	WP_061408765.1	transporter substrate-binding domain-containing protein	-
UP12_RS11995 (UP12_12005)	-	2401304..2401957 (+)	654	WP_058014572.1	amino acid ABC transporter permease	-
UP12_RS12000 (UP12_12010)	-	2401972..2402622 (+)	651	WP_003216394.1	amino acid ABC transporter permease	-
UP12_RS19930	-	2402665..2402796 (-)	132	WP_003216198.1	YrzQ family protein	-
UP12_RS12005 (UP12_12015)	-	2402817..2403008 (-)	192	WP_003216308.1	hypothetical protein	-
UP12_RS12010 (UP12_12020)	-	2403022..2403480 (-)	459	WP_244270752.1	prc-barrel domain-containing protein	-
UP12_RS12015 (UP12_12025)	recD2	2403616..2406000 (-)	2385	WP_061408771.1	ATP-dependent RecD-like DNA helicase	Machinery gene
UP12_RS12020 (UP12_12030)	-	2406020..2406673 (-)	654	WP_058014569.1	tetratricopeptide repeat protein	-
UP12_RS12025 (UP12_12035)	mnmA	2406734..2407852 (-)	1119	WP_061408774.1	tRNA 2-thiouridine(34) synthase MnmA	-
UP12_RS12030 (UP12_12040)	-	2407948..2409090 (-)	1143	WP_058014568.1	cysteine desulfurase family protein	-
UP12_RS12035 (UP12_12045)	-	2409109..2409528 (-)	420	WP_061408777.1	Rrf2 family transcriptional regulator	-

Sequence

Protein

• Length: 794 a.a.
• Molecular weight: 88906.42 Da
• Isoelectric Point: 5.2642

>NTDB_id=141338 UP12_RS12015 WP_061408771.1 2403616..2406000(-) (recD2) [Bacillus pumilus strain SH-B9]
MQEHPDQMKLEDEPFLKGTVQAVIFHNESNLYSVLKVKVIETSENLEEKTASVTGYFPALHEEETYTFYGKVTSHPKFGE
QFQATHFQKEVPTTKQGIIHYLSSDLFEGIGKKTAEEIVGQLGSQTLHKIMRDPAVLYDVPRLSKKKADKLAAALQEHQG
LEQIMISLNQYGFGPQLSMKIYQVYESETLQKIEENPYQLVKDVEGIGFIKADELGARTGISGSDPERIRAALLYTVETA
SLQDGHTYIQTKDLIVETRKLLNQTGNEYKVTEMDVANQIIALGEGKEMIIEDERCYHPSLFYAEQSVAKRIQKIVSQTE
YADQFPESEFLLALGELEERLGVQYAPTQKEAIQKALMSPMLLLTGGPGTGKTTVIKGIVELYSDLHGVSLDPSDYKKDE
SFPFVLAAPTGRAAKRMTESTGLPAVTIHRLLGWNGSEGFSHDEEQPIEGKLVIIDESSMLDIWLANHLFKAIPDHIQVI
MVGDEHQLPSVGPGQVLRDLLASQAVPAVTLTDIYRQADGSSIVELAHDMKNGVLPKDITARSKDRSFIKCSADQMKEVI
EKVVSNAAQKGYSAKDIQVLAPMYKGKAGINELNKMLQHILNPKKPKGREIPFGDVVYRTGDKVLQLVNQPENNIFNGDI
GEIVSIFYAKENTEKEDMAVISFDGNEITFTKKDFHQFTHAYCCSIHKSQGSEFPIVVLPVLRSYYRMLRRNLLYTAITR
SKKFLILCGEESALEWGVKNNEDSLRQTSLTMRLVQTGEVMDAELAALQKELPFSVHDANIGMEGITPFDFMHE

Nucleotide

• Length: 2385 bp

>NTDB_id=141338 UP12_RS12015 WP_061408771.1 2403616..2406000(-) (recD2) [Bacillus pumilus strain SH-B9]
GTGCAGGAACATCCAGATCAAATGAAGCTTGAGGACGAACCGTTTTTAAAGGGGACAGTTCAAGCCGTTATTTTCCATAA
TGAAAGTAATTTATACTCGGTGTTAAAGGTGAAAGTCATTGAAACATCGGAAAACTTAGAGGAAAAAACAGCATCTGTCA
CAGGCTACTTCCCAGCACTTCATGAGGAAGAAACTTACACCTTCTATGGCAAAGTCACAAGCCACCCGAAGTTTGGTGAA
CAGTTTCAGGCAACTCATTTTCAAAAAGAAGTACCGACAACAAAGCAAGGAATTATTCATTATCTCTCAAGTGATTTATT
TGAGGGGATAGGCAAAAAGACGGCGGAAGAAATTGTAGGACAGCTTGGCAGTCAGACGCTTCATAAAATTATGCGTGACC
CAGCGGTTTTGTATGACGTTCCGCGCTTATCAAAAAAGAAGGCAGATAAGCTGGCCGCAGCGCTTCAGGAGCATCAAGGA
TTGGAACAAATCATGATCAGCCTCAATCAATACGGCTTTGGTCCGCAGCTCAGCATGAAGATTTATCAAGTGTACGAGAG
TGAGACGCTGCAGAAGATTGAAGAAAACCCGTATCAGCTTGTCAAGGATGTCGAAGGGATCGGGTTTATTAAGGCAGATG
AACTTGGCGCTAGAACTGGCATCTCAGGAAGTGACCCAGAGCGAATCCGTGCAGCCTTGCTTTATACAGTGGAGACAGCC
AGTCTTCAGGACGGTCACACGTACATACAAACAAAGGATTTGATCGTCGAAACCCGCAAGCTACTCAATCAGACAGGCAA
TGAGTACAAAGTGACGGAAATGGACGTCGCCAATCAGATCATTGCACTTGGCGAAGGGAAAGAGATGATCATTGAAGATG
AGCGCTGCTATCATCCGTCCTTATTTTATGCCGAGCAAAGTGTCGCCAAACGTATACAAAAAATCGTCTCCCAAACGGAA
TATGCAGATCAATTTCCTGAATCAGAATTCCTTCTAGCCCTTGGTGAGCTCGAGGAACGGCTGGGCGTCCAGTATGCGCC
GACACAAAAGGAAGCGATTCAAAAGGCACTCATGTCCCCAATGCTGCTTTTAACAGGCGGACCTGGGACTGGGAAAACAA
CTGTCATTAAAGGGATTGTTGAGCTTTACAGCGACCTTCACGGTGTATCTCTTGATCCGAGTGATTACAAAAAAGATGAA
TCCTTTCCATTTGTGCTTGCGGCGCCAACTGGACGAGCAGCTAAACGAATGACAGAATCAACAGGGCTTCCAGCTGTGAC
GATTCACCGTCTGCTTGGTTGGAACGGATCTGAGGGCTTCTCGCATGATGAAGAACAGCCGATTGAAGGAAAGCTTGTCA
TCATTGATGAATCAAGTATGCTAGATATTTGGCTTGCGAATCACTTGTTTAAAGCCATTCCTGACCATATCCAAGTGATC
ATGGTGGGAGATGAACATCAGCTTCCGTCTGTCGGGCCAGGCCAAGTGTTAAGAGACTTGCTTGCATCACAAGCCGTACC
AGCTGTTACCCTCACAGATATTTACCGGCAGGCAGACGGCTCCAGCATTGTTGAACTTGCACATGATATGAAAAATGGTG
TCCTGCCAAAGGATATTACCGCACGTTCAAAGGATCGTTCCTTCATAAAATGCTCAGCTGATCAAATGAAAGAAGTCATT
GAGAAAGTCGTCAGCAATGCTGCTCAAAAAGGCTATTCAGCTAAAGACATTCAGGTGCTTGCGCCCATGTATAAAGGAAA
AGCAGGCATTAATGAGCTCAATAAAATGCTGCAGCATATTTTGAATCCTAAAAAACCAAAGGGCAGAGAAATCCCGTTTG
GTGATGTGGTGTACCGGACCGGTGATAAAGTGCTTCAGCTTGTGAATCAGCCGGAGAACAATATTTTTAACGGTGATATT
GGAGAAATTGTCTCGATTTTTTATGCGAAAGAAAACACGGAAAAAGAAGATATGGCTGTGATCTCCTTTGATGGGAATGA
AATCACTTTTACTAAAAAGGATTTTCATCAATTTACACATGCCTATTGCTGCTCCATCCATAAATCACAAGGTAGTGAAT
TTCCCATTGTTGTACTGCCAGTCTTGAGAAGCTACTACAGAATGCTTCGGCGAAATCTGCTGTACACAGCCATTACACGA
AGTAAAAAGTTTTTAATCCTGTGCGGCGAGGAATCAGCACTGGAGTGGGGCGTGAAAAACAATGAGGATTCGCTCAGACA
AACGTCCTTAACGATGCGGCTCGTGCAAACAGGAGAGGTCATGGATGCGGAGCTTGCAGCACTTCAAAAAGAACTGCCGT
TTAGCGTACATGATGCAAATATCGGTATGGAGGGAATCACTCCATTTGATTTTATGCATGAATAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-248)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (593-659)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (680-728)

• AAA domain (AAA_30) (345-553)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	79.748	100	0.798