Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   UP12_RS07870 Genome accession   NZ_CP011007
Coordinates   1602662..1603441 (+) Length   259 a.a.
NCBI ID   WP_003210838.1    Uniprot ID   -
Organism   Bacillus pumilus strain SH-B9     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1597662..1608441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UP12_RS07850 (UP12_07855) trmFO 1598366..1599670 (+) 1305 WP_034662383.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  UP12_RS07855 (UP12_07860) xerC 1599733..1600650 (+) 918 WP_058013999.1 tyrosine recombinase XerC -
  UP12_RS07860 (UP12_07865) hslV 1600665..1601210 (+) 546 WP_003211247.1 ATP-dependent protease subunit HslV -
  UP12_RS07865 (UP12_07870) hslU 1601227..1602627 (+) 1401 WP_003211907.1 HslU--HslV peptidase ATPase subunit -
  UP12_RS07870 (UP12_07875) codY 1602662..1603441 (+) 780 WP_003210838.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  UP12_RS07875 (UP12_07880) flgB 1603728..1604117 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  UP12_RS07880 (UP12_07885) flgC 1604117..1604569 (+) 453 WP_058013998.1 flagellar basal body rod protein FlgC -
  UP12_RS07885 (UP12_07890) fliE 1604581..1604898 (+) 318 WP_058013997.1 flagellar hook-basal body complex protein FliE -
  UP12_RS07890 (UP12_07895) fliF 1604948..1606540 (+) 1593 WP_058013996.1 flagellar basal-body MS-ring/collar protein FliF -
  UP12_RS07895 (UP12_07900) fliG 1606552..1607568 (+) 1017 WP_012009955.1 flagellar motor switch protein FliG -
  UP12_RS07900 (UP12_07905) fliH 1607561..1608325 (+) 765 WP_058013995.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29060.31 Da        Isoelectric Point: 4.6614

>NTDB_id=141326 UP12_RS07870 WP_003210838.1 1602662..1603441(+) (codY) [Bacillus pumilus strain SH-B9]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKSE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=141326 UP12_RS07870 WP_003210838.1 1602662..1603441(+) (codY) [Bacillus pumilus strain SH-B9]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAGGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAATTCCCTGAAGAATATACAAAGAGTCTATTC
AACATCCCTGAAACATCTTCAAATCTTGACATTAACAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTTGA
ATCAGGTTTGACAACCATTGTGCCAATTATCGGAGGAGGAGATCGTTTAGGAACGTTAATCCTGTCTCGTTTGCAAGATA
CATTTAAAGATGATGATTTAATTCTTGCTGAATACGGTGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAGTCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCAGTTGTCCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCCAT
TGAACACATCTTTGAAGAACTTGATGGCAACGAAGGGCTTCTAGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCTGGCGTCATCGAATCTCGCTCTCTTGGAATGAAGGGAACG
TATATCAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

95.367

100

0.954
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment