Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   UC78_RS06415 Genome accession   NZ_CP010906
Coordinates   1261569..1262084 (-) Length   171 a.a.
NCBI ID   WP_002862019.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 35925     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1256569..1267084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UC78_RS06400 (UC78_1282) - 1256689..1258497 (-) 1809 WP_044306190.1 motility associated factor glycosyltransferase family protein -
  UC78_RS06405 (UC78_1283) - 1258494..1260317 (-) 1824 WP_044306191.1 motility associated factor glycosyltransferase family protein -
  UC78_RS08485 - 1260327..1261569 (-) 1243 Protein_1238 DUF2920 family protein -
  UC78_RS06415 (UC78_1286) ctsG 1261569..1262084 (-) 516 WP_002862019.1 type II secretion system protein Machinery gene
  UC78_RS06420 (UC78_1287) tsaD 1262085..1263092 (-) 1008 WP_044306192.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  UC78_RS06430 (UC78_1289) - 1263089..1264482 (-) 1394 Protein_1241 M99 family carboxypeptidase catalytic domain-containing protein -
  UC78_RS06435 (UC78_1290) dxr 1264484..1265554 (-) 1071 WP_044306195.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  UC78_RS06440 (UC78_1291) cdsA 1265551..1266276 (-) 726 WP_044306196.1 phosphatidate cytidylyltransferase -
  UC78_RS06445 (UC78_1292) - 1266285..1266623 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18662.56 Da        Isoelectric Point: 6.4693

>NTDB_id=140764 UC78_RS06415 WP_002862019.1 1261569..1262084(-) (ctsG) [Campylobacter jejuni subsp. jejuni strain 35925]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGIKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=140764 UC78_RS06415 WP_002862019.1 1261569..1262084(-) (ctsG) [Campylobacter jejuni subsp. jejuni strain 35925]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93

Multiple sequence alignment