Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   HR49_RS07490 Genome accession   NZ_CP010820
Coordinates   1530257..1532689 (+) Length   810 a.a.
NCBI ID   WP_036119087.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain RB-21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1525257..1537689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR49_RS07465 (HR49_07475) - 1525647..1526306 (+) 660 WP_036119104.1 tetratricopeptide repeat protein -
  HR49_RS07470 (HR49_07480) - 1526497..1527939 (+) 1443 WP_036119102.1 MDR family MFS transporter -
  HR49_RS07475 (HR49_07485) - 1528015..1528746 (-) 732 WP_036119096.1 GTP pyrophosphokinase -
  HR49_RS07480 (HR49_07490) - 1529017..1529304 (-) 288 WP_008181526.1 hypothetical protein -
  HR49_RS07485 (HR49_07495) hisA 1529301..1530068 (-) 768 WP_036119090.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase -
  HR49_RS07490 (HR49_07500) recD2 1530257..1532689 (+) 2433 WP_036119087.1 ATP-dependent RecD-like DNA helicase Machinery gene
  HR49_RS07495 (HR49_07505) hpaB 1532813..1534246 (+) 1434 WP_036149205.1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component -
  HR49_RS07500 (HR49_07510) corA 1534713..1535678 (+) 966 WP_036127283.1 magnesium/cobalt transporter CorA -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 90812.33 Da        Isoelectric Point: 4.9642

>NTDB_id=140066 HR49_RS07490 WP_036119087.1 1530257..1532689(+) (recD2) [Lysinibacillus fusiformis strain RB-21]
MTDHLDLFELNKFFILGRPIVSIFHNTQNMYSIIRVKIQETNLQYEDKEIIVVGYFPPLQMDEQYRFTGILKQHPKYGAQ
FQIETFTKEVPATEQGIIHYLSSDLFVGIGKKTAETIVEKLGANALRLILEDPSALDAVPRLSSEKKEVIHRTIEQNLGL
ERVMIQLNEWGFGPQLGMKIYQTYRTEAIELLTENPYRLIEDVEGVGFFRADELGAKLGITGKHPDRVKAAIFHVLNTAA
LSDGHVYLDAEHVLPLVKEMLEQSQRQEIPFEDISKACIELREEGKICGEETRLYLPSLYFSEVGIASKILTLVERNSKA
EHFSKDEIRKAIGETEELLHVTYAETQANAIEQALNSAVMILTGGPGTGKTTVVRGVVEVYAKLHGLSLNPKEYAQKEEP
FPIILCAPTGRAAKRLAESTELPAMTIHRLLGFTGQEKEEETEREVTGKLIIVDEMSMVDTWLAHQLLKALHEDVQVVFV
GDQDQLPPVGPGQVLKDLLASKQLPTVELTDVYRQAEGSTIIELAHQIKKGTIPKDLTSKTTDRSFIKSSVDQVGNVVTQ
VVKSAVAKGQEIRNIQVLAPMYKGPAGIDNLNKMIQELINPNDTGTRKELVFGDVTYRIKDKVLQLVNQPESNVFNGDMG
EVISIIKAKETVEKQDLLIVSFDGIEVTYQRSDLNQLTLAYCCSIHKSQGSEFQTVIMPVVKGYSKMLRRNLLYTGITRA
KNFLILCGEPDVLADGLQRTDDLQRFTSLRARLNPMDVDEVIVEVEAVPVKQEVVQEAAIEDPKLTVETAPYIHPMIGMD
DVSPYDFLEK

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=140066 HR49_RS07490 WP_036119087.1 1530257..1532689(+) (recD2) [Lysinibacillus fusiformis strain RB-21]
ATGACAGATCATCTCGATTTATTTGAACTCAATAAATTTTTTATTCTCGGACGTCCGATTGTCTCTATTTTTCATAACAC
ACAAAATATGTATTCCATTATACGAGTGAAAATTCAAGAGACAAACTTACAGTATGAAGATAAAGAAATTATTGTTGTTG
GCTATTTTCCACCGTTACAAATGGATGAGCAATACCGCTTTACAGGTATATTGAAACAGCATCCTAAATATGGTGCACAA
TTCCAAATCGAGACATTTACAAAAGAGGTACCCGCTACTGAACAAGGAATTATTCATTATTTATCTAGTGACTTATTTGT
AGGAATCGGGAAAAAAACGGCTGAAACCATTGTTGAAAAACTAGGTGCTAATGCATTACGTCTTATTTTAGAAGATCCGA
GTGCACTGGATGCTGTTCCACGTTTATCATCTGAAAAAAAAGAAGTGATCCATCGCACGATTGAGCAAAATCTTGGTTTA
GAACGGGTAATGATCCAGCTAAATGAATGGGGCTTTGGTCCACAGCTTGGAATGAAAATATATCAAACCTATCGAACTGA
AGCCATTGAATTACTAACTGAAAACCCATATCGCTTAATAGAAGATGTGGAAGGGGTAGGGTTCTTTCGAGCAGATGAGC
TTGGTGCCAAATTAGGCATTACCGGAAAACATCCTGACCGTGTCAAAGCAGCGATTTTCCATGTTTTAAATACGGCTGCA
CTATCTGACGGGCATGTTTATCTAGATGCGGAGCATGTTCTACCACTTGTAAAGGAAATGCTTGAACAAAGCCAACGTCA
GGAAATTCCGTTTGAAGACATCTCAAAAGCATGTATCGAGCTACGAGAAGAAGGCAAAATTTGTGGGGAAGAAACAAGAT
TATATTTACCCTCTCTTTATTTTTCTGAGGTGGGAATTGCTTCTAAAATATTGACGCTTGTTGAACGAAATAGCAAGGCT
GAGCATTTTAGCAAAGATGAGATTCGTAAAGCGATTGGTGAAACTGAGGAACTACTCCATGTGACTTATGCTGAAACACA
AGCAAATGCCATTGAACAGGCTTTAAATTCAGCCGTAATGATTTTAACAGGTGGACCTGGTACGGGTAAAACGACTGTTG
TACGTGGGGTTGTTGAAGTTTATGCGAAGCTTCATGGCTTATCATTAAATCCAAAAGAATATGCTCAAAAAGAGGAGCCT
TTTCCTATTATCCTTTGTGCACCCACTGGGCGAGCTGCGAAGCGCTTAGCTGAATCGACTGAACTACCAGCTATGACTAT
TCATCGTTTACTCGGCTTTACTGGTCAAGAAAAAGAAGAAGAGACTGAACGAGAGGTCACAGGTAAGCTTATTATTGTAG
ATGAAATGTCAATGGTGGATACGTGGCTTGCTCATCAATTATTAAAAGCTTTACATGAGGATGTACAGGTTGTCTTTGTA
GGGGACCAGGACCAATTACCGCCTGTAGGACCAGGACAGGTGTTGAAGGATTTATTAGCATCCAAGCAGCTTCCAACGGT
GGAATTGACAGATGTTTACCGACAAGCAGAGGGCTCTACAATTATTGAACTAGCCCATCAAATCAAAAAAGGAACCATTC
CGAAAGATTTAACATCGAAAACTACTGATCGCTCGTTTATTAAATCATCCGTCGATCAGGTAGGAAATGTTGTGACACAG
GTAGTAAAAAGTGCTGTTGCTAAGGGGCAAGAAATTCGTAATATACAAGTATTAGCTCCGATGTATAAAGGTCCTGCTGG
CATTGATAATTTAAATAAAATGATTCAAGAGCTTATTAATCCTAATGATACAGGGACAAGAAAGGAACTTGTCTTTGGGG
ACGTAACATATCGAATAAAGGATAAAGTTCTGCAGCTCGTCAATCAGCCTGAAAGTAATGTTTTTAATGGTGATATGGGA
GAAGTCATTAGTATTATTAAGGCAAAAGAGACAGTAGAAAAACAAGATTTACTGATTGTCTCCTTTGATGGCATTGAAGT
GACCTATCAACGAAGTGACCTCAATCAATTGACACTAGCTTATTGTTGCTCCATTCATAAATCTCAAGGTTCAGAGTTTC
AAACCGTCATTATGCCTGTTGTCAAAGGGTATTCTAAAATGCTGCGGCGTAATCTTTTGTACACAGGTATTACAAGAGCG
AAAAACTTTTTGATTTTATGTGGGGAACCCGATGTCCTGGCAGATGGTTTGCAGCGTACAGACGATTTACAGCGTTTTAC
TTCGTTGCGCGCTCGATTAAATCCAATGGATGTCGACGAAGTCATTGTTGAAGTCGAGGCAGTTCCAGTAAAACAAGAGG
TTGTGCAAGAAGCGGCTATCGAGGACCCTAAATTAACAGTAGAAACAGCTCCTTATATTCATCCAATGATTGGTATGGAT
GATGTCTCCCCCTATGATTTTTTGGAAAAGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-661)

AAA domain (AAA_30)

(343-549)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.147

100

0.525

Multiple sequence alignment