Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   VAA049_RS19650 Genome accession   NZ_CP010811
Coordinates   187769..188629 (-) Length   286 a.a.
NCBI ID   WP_080342622.1    Uniprot ID   -
Organism   Vibrio cholerae strain 1154-74     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 182769..193629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAA049_RS00920 (VAA049_174) gspL 183027..184238 (+) 1212 WP_046121296.1 type II secretion system protein GspL -
  VAA049_RS00925 (VAA049_175) - 184248..184745 (+) 498 WP_046121297.1 type II secretion system protein M -
  VAA049_RS00930 (VAA049_176) - 184747..185505 (+) 759 WP_046121298.1 type II secretion system protein N -
  VAA049_RS00935 (VAA049_177) cysQ 185557..186384 (-) 828 WP_000106799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  VAA049_RS00940 (VAA049_178) nudE 186407..186955 (-) 549 WP_000095812.1 ADP compounds hydrolase NudE -
  VAA049_RS00945 (VAA049_179) nfuA 187094..187681 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  VAA049_RS19650 comF 187769..188629 (-) 861 WP_080342622.1 ComF family protein Machinery gene
  VAA049_RS00955 (VAA049_181) bioH 188565..189326 (+) 762 WP_046121299.1 pimeloyl-ACP methyl ester esterase BioH -
  VAA049_RS00960 (VAA049_182) - 189488..189958 (+) 471 WP_000961393.1 hypothetical protein -
  VAA049_RS00965 (VAA049_183) - 190053..192374 (-) 2322 WP_046121300.1 Tex family protein -
  VAA049_RS00970 (VAA049_184) greB 192744..193226 (+) 483 WP_000850492.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32540.52 Da        Isoelectric Point: 8.0588

>NTDB_id=139971 VAA049_RS19650 WP_080342622.1 187769..188629(-) (comF) [Vibrio cholerae strain 1154-74]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSIFIFIHTANWQDEAHYPDSWLAMLTHWFRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLGQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWQRGFNQSDLLARELANVLNIEYDHQLFARRRATPHQQGLSKAQRIHNLSGAFVLNHLPNQL
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=139971 VAA049_RS19650 WP_080342622.1 187769..188629(-) (comF) [Vibrio cholerae strain 1154-74]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
CTCTATTTTCATCTTCATCCACACTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGTTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGCCGACTGGCGCTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
TGTTGATCAGTGCGGGCAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTCCCAC
TCAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTGCTCGCCACCCAG
ATTAACGAGCCAGCCCCTTTGCTGTGCAGTGTACCGCTGCATTGGCGGCGACGTTGGCAACGCGGCTTTAATCAAAGCGA
TCTGCTGGCACGTGAATTAGCCAATGTGCTGAACATTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTGAGCGGTGCGTTTGTGCTCAATCACCTACCAAACCAACTA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

96.853

100

0.969
  comF Vibrio campbellii strain DS40M4

47.059

83.217

0.392

Multiple sequence alignment