Detailed information NTG0139879

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: FORC22_RS05510
• Genome accession: NZ_CP013248
• Coordinates: 1169158..1170447 (+)
• Length: 429 a.a.
• NCBI ID: WP_043043278.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain FORC_022
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1164158..1175447

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC22_RS05495 (FORC22_1050)	lrp	1164657..1165151 (+)	495	WP_005378234.1	leucine-responsive transcriptional regulator Lrp	-
FORC22_RS05500 (FORC22_1051)	-	1165304..1168390 (+)	3087	WP_071651933.1	DNA translocase FtsK	-
FORC22_RS05505 (FORC22_1052)	lolA	1168465..1169091 (+)	627	WP_023585423.1	outer membrane lipoprotein chaperone LolA	-
FORC22_RS05510 (FORC22_1053)	rarA	1169158..1170447 (+)	1290	WP_043043278.1	replication-associated recombination protein A	Machinery gene
FORC22_RS05515 (FORC22_1054)	serS	1170539..1171846 (+)	1308	WP_005495761.1	serine--tRNA ligase	-
FORC22_RS05520 (FORC22_1055)	-	1172216..1172782 (+)	567	WP_229035997.1	ATPase	-
FORC22_RS05525 (FORC22_1056)	-	1172776..1173216 (+)	441	WP_071651935.1	hypothetical protein	-
FORC22_RS05530 (FORC22_1057)	-	1173351..1173617 (+)	267	WP_062858587.1	DksA/TraR family C4-type zinc finger protein	-
FORC22_RS05535 (FORC22_1058)	bioA	1173687..1174967 (-)	1281	WP_025632145.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 47621.81 Da
• Isoelectric Point: 5.8544

>NTDB_id=139879 FORC22_RS05510 WP_043043278.1 1169158..1170447(+) (rarA) [Vibrio parahaemolyticus strain FORC_022]
MRPQTIEQYIGQQHILGPGKPLRRALEAGHVHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAR
ENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLDKEEISLALNQAIN
DKERGLGNTPANFADNVLDRLAELVNGDARMSLNYLELLYDMAEENDQGEKEITLKLLAEVAGEKVSRFDNKGDIWYDLI
SAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVY
LACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPTSLMKDMGYGAEYRYAHDEPGAYAAGEQYLPPEMADRKYYQPT
NRGLETKIGEKLDYLAKLDANSQQKRYEK

Nucleotide

• Length: 1290 bp

>NTDB_id=139879 FORC22_RS05510 WP_043043278.1 1169158..1170447(+) (rarA) [Vibrio parahaemolyticus strain FORC_022]
ATGAGACCGCAAACTATTGAGCAGTACATCGGTCAGCAACACATTCTTGGCCCGGGTAAACCCCTGCGTCGCGCGTTAGA
GGCTGGCCATGTCCACTCAATGATCCTTTGGGGGCCTCCTGGTACAGGTAAAACCACGTTAGCGGAAGTCGCTGCTAATT
ACGCCAATGCGGAAGTTGAACGCGTGTCTGCGGTGACGTCCGGTGTGAAAGAGATTCGTGCTGCAATCGAAAAAGCGCGC
GAGAACAAAATGGCGGGTCGCCGCACCATCTTGTTTGTGGATGAGGTCCATCGCTTCAACAAATCGCAACAAGATGCGTT
CTTACCACATATTGAAGATGGAACCGTAACGTTTATTGGCGCAACGACAGAGAACCCGTCTTTCGAACTGAACAACGCAT
TGTTGTCTCGTGCTCGAGTCTACAAGCTGACTTCACTGGATAAAGAAGAGATCTCACTCGCACTAAATCAAGCGATTAAC
GACAAAGAACGAGGGCTGGGCAATACGCCAGCGAACTTTGCTGATAATGTGTTAGACCGTCTAGCCGAGTTGGTGAACGG
TGATGCTCGCATGTCTCTTAACTACCTTGAGCTTCTCTACGATATGGCAGAAGAGAATGATCAAGGTGAAAAAGAGATAA
CACTCAAACTGCTTGCTGAAGTAGCCGGGGAGAAAGTCTCTCGCTTCGATAATAAAGGCGACATTTGGTACGATTTGATC
TCCGCTGTGCACAAATCTATTCGTGGATCAAACCCAGATGCCGCTTTGTATTGGGCTGCTCGTATGATAGCTGCAGGTTG
TGATCCACTTTACATTGCCCGCCGGTTACTTGCGATAGCATCGGAAGATGTCGGCAATGCGGACCCTAGAGCGATGCAAG
TTGCTCTTTCCGCGTGGGACTGCTTTACACGCGTTGGTCCAGCTGAAGGTGAGCGTGCGATTGCTCAAGCAATTGTTTAT
CTCGCGTGCGCTCCAAAGAGTAATGCCGTTTATGTTGCTTGGAAACAAGCGCTCACTGACGCACATAACTTGCCTGAATA
TGAAGTGCCGCATCACTTGCGTAATGCACCCACCAGTCTGATGAAAGATATGGGCTATGGCGCAGAATATCGATATGCTC
ACGACGAGCCGGGTGCTTATGCTGCGGGTGAGCAATATTTGCCACCAGAAATGGCAGATCGTAAGTACTATCAGCCGACA
AATCGCGGCCTAGAAACCAAAATCGGCGAAAAGTTAGATTACTTGGCTAAATTAGACGCAAATAGCCAACAAAAGCGCTA
TGAAAAGTAG

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (169-248)

• MgsA AAA+ ATPase C terminal (MgsA_C) (249-415)

• ATPase family associated with various cellular activities (AAA) (AAA) (34-139)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.474	97.436	0.385