Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   APQ13_RS09275 Genome accession   NZ_CP013237
Coordinates   1914983..1915768 (+) Length   261 a.a.
NCBI ID   WP_002276477.1    Uniprot ID   -
Organism   Streptococcus mutans strain NG8 isolate Dental Plaque     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1909983..1920768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ13_RS09255 (APQ13_09235) - 1910737..1912122 (+) 1386 WP_002268948.1 Cof-type HAD-IIB family hydrolase -
  APQ13_RS09260 (APQ13_09240) - 1912400..1912849 (-) 450 WP_002263469.1 universal stress protein -
  APQ13_RS09265 (APQ13_09245) - 1912947..1913483 (-) 537 WP_002263470.1 biotin transporter BioY -
  APQ13_RS09270 (APQ13_09250) - 1913660..1914874 (+) 1215 WP_002263471.1 pyridoxal phosphate-dependent aminotransferase -
  APQ13_RS09275 (APQ13_09255) codY 1914983..1915768 (+) 786 WP_002276477.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  APQ13_RS09280 (APQ13_09260) - 1915770..1916321 (+) 552 WP_002289766.1 cysteine hydrolase family protein -
  APQ13_RS09285 (APQ13_09265) aspS 1916582..1918333 (+) 1752 WP_002289764.1 aspartate--tRNA ligase -
  APQ13_RS09290 (APQ13_09270) gatC 1918460..1918762 (+) 303 WP_002263475.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  APQ13_RS09295 (APQ13_09275) gatA 1918762..1920228 (+) 1467 WP_002263829.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28940.11 Da        Isoelectric Point: 4.5032

>NTDB_id=139746 APQ13_RS09275 WP_002276477.1 1914983..1915768(+) (codY) [Streptococcus mutans strain NG8 isolate Dental Plaque]
MANLLSKTRRITSILQRSVESLQSDLPYNTIADQLAEIIDCNACIIDGSGIILGYAMKYKTNTDRVEEFFQAKKLPDDYV
KSASRIYDTEANLSVENDLTIFPIESKDIYPDGLTTIAPIYGGGMRLGSLIIWRNDKEFNDDDLILIEISSTVVGIQLLN
LQTENLEETIRKQTAINMAINTLSYSEMKAVAAILNELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKDYG

Nucleotide


Download         Length: 786 bp        

>NTDB_id=139746 APQ13_RS09275 WP_002276477.1 1914983..1915768(+) (codY) [Streptococcus mutans strain NG8 isolate Dental Plaque]
ATGGCTAATTTATTATCGAAAACGCGACGTATTACATCCATTTTACAACGCTCGGTTGAGAGCCTTCAAAGTGATTTGCC
TTATAATACGATTGCAGATCAATTGGCTGAAATTATTGATTGTAATGCTTGTATTATTGATGGTAGTGGTATTATTCTTG
GCTATGCTATGAAGTATAAAACCAATACAGATCGTGTTGAAGAATTTTTCCAAGCTAAAAAATTACCTGATGATTATGTA
AAATCGGCCAGCCGTATTTATGATACAGAAGCCAATCTGTCGGTTGAAAATGATTTGACCATTTTTCCAATTGAATCAAA
AGATATCTATCCTGATGGCTTGACGACTATTGCTCCCATCTATGGCGGCGGTATGCGTCTTGGTTCTCTTATTATCTGGC
GTAATGATAAAGAATTCAATGATGACGATTTGATTCTAATTGAGATTTCTTCTACTGTTGTTGGAATTCAATTATTGAAC
TTGCAGACAGAAAATCTTGAAGAAACAATTCGTAAGCAGACTGCTATTAATATGGCGATTAATACCTTGTCTTATTCAGA
AATGAAAGCTGTCGCAGCTATTCTCAATGAATTAGATGGCAATGAAGGTCGCTTGACCGCATCGGTTATTGCTGATCGTA
TCGGTATTACACGTAGCGTGATTGTTAATGCTCTTAGAAAGTTAGAAAGTGCCGGTATTATTGAAAGTCGTTCCTTAGGT
ATGAAAGGTACATATCTCAAAGTTATTAATGAAGGTATTTTTGATAAATTAAAGGACTATGGTTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-260)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

65.37

98.467

0.644
  codY Bacillus subtilis subsp. subtilis str. 168

48.047

98.084

0.471

Multiple sequence alignment