Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   APQ13_RS09060 Genome accession   NZ_CP013237
Coordinates   1869823..1872186 (-) Length   787 a.a.
NCBI ID   WP_002273875.1    Uniprot ID   -
Organism   Streptococcus mutans strain NG8 isolate Dental Plaque     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1864823..1877186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ13_RS09040 (APQ13_09020) - 1865591..1866517 (-) 927 WP_002263353.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  APQ13_RS09045 (APQ13_09025) - 1866532..1867350 (-) 819 WP_002263354.1 PTS mannose/fructose/sorbose transporter subunit IIC -
  APQ13_RS09050 (APQ13_09030) - 1867385..1868377 (-) 993 WP_002263355.1 PTS sugar transporter subunit IIB -
  APQ13_RS09055 (APQ13_09035) - 1869254..1869724 (-) 471 WP_002263356.1 hypothetical protein -
  APQ13_RS09060 (APQ13_09040) recD/recD2/recDB 1869823..1872186 (-) 2364 WP_002273875.1 ATP-dependent RecD-like DNA helicase Machinery gene
  APQ13_RS09065 (APQ13_09045) lepB 1872272..1872859 (-) 588 WP_002263358.1 signal peptidase I -
  APQ13_RS09070 (APQ13_09050) rnhC 1872879..1873790 (-) 912 WP_002276756.1 ribonuclease HIII -
  APQ13_RS09075 (APQ13_09055) - 1873986..1874291 (+) 306 WP_002263360.1 hypothetical protein -
  APQ13_RS09080 (APQ13_09060) - 1874288..1874833 (+) 546 WP_002263361.1 CvpA family protein -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88813.25 Da        Isoelectric Point: 5.7830

>NTDB_id=139739 APQ13_RS09060 WP_002273875.1 1869823..1872186(-) (recD/recD2/recDB) [Streptococcus mutans strain NG8 isolate Dental Plaque]
MTYYFSGTIDRVIFENTSNFFKIILLEIDDTDSDFDDFEIIVTGTIADVIEGENYTFWGELTQHPKYGQQLKVERYQRAK
PSSAGLIKYFSSQHFKGIGKKTAEKIIHLYGDDPIDNILEDPDKLESISGLSKANRENLVSKLRLNYGAEQILAKLAEYG
LNNKTAVQIFERYKEESLTVITENPYQLVEDIQGIGFKMADKLAEQVGINSDAPQRFRAALVHTLLETSIDKGDTYIEAK
ELLEKSLFILEEVRQVELDPSQIAQELTQLISENKVQNIGTKIFDNTLFYAESGIHKHLTRILDRPLEKAISSQDIQTEI
KHIQAEFNINYDKAQKNAIQKAIQSKVFLLTGGPGTGKTTVINGIIKAYANLHQIDLQKSDRPIILAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDSEYQALDDFLDCDLIIIDEFSMVDTWLANQLFSAIASNTQIVIVGDSDQLPSVGPGQVLADLL
KINRLPQVSLTKIFRQSEDSTIVTLANQIRQGRLPTDFTAKKADRSYFEAQSTHIPQMIQKIVSSALKSGIDAQEIQILA
PMYRGQAGITHLNKLMQDLLNPLNNQLEFQFNDLHFRKGDKVLHLINDAQINVFNGDIGYITDLIPAKYTESKQDEMILD
FDGTEINYPRNEWLKITLAYAMSIHKSQGSEFKVVILPVTRQSGRLLQRNLIYTAITRSKSKLVMLGEIAAFDNAIKNEG
TKRKTYLIERFKKDECSGHHNTEKNKQGVKESAAILKEDFILTERNILTIDPMIGLSQADIDLFFKK

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=139739 APQ13_RS09060 WP_002273875.1 1869823..1872186(-) (recD/recD2/recDB) [Streptococcus mutans strain NG8 isolate Dental Plaque]
ATGACCTATTACTTTTCAGGCACCATTGACCGTGTTATTTTTGAAAATACCAGCAATTTTTTTAAAATTATTCTTCTGGA
AATTGACGATACTGACAGCGATTTTGATGATTTTGAAATTATTGTGACAGGTACTATTGCTGATGTTATTGAAGGAGAAA
ACTATACTTTTTGGGGTGAATTGACCCAGCATCCTAAATATGGACAGCAGTTAAAAGTGGAAAGATACCAGCGTGCTAAA
CCCTCTTCTGCTGGTCTGATTAAGTATTTTTCCAGTCAGCATTTCAAGGGAATCGGGAAAAAAACAGCCGAAAAAATTAT
TCACTTATATGGTGATGACCCTATTGATAATATTCTGGAAGATCCTGATAAGTTAGAAAGCATTAGTGGACTTTCTAAGG
CTAATAGAGAAAATTTAGTTAGTAAACTTCGTCTTAACTACGGTGCTGAACAGATTCTGGCAAAATTAGCAGAATATGGA
TTAAATAACAAAACAGCTGTTCAAATTTTTGAACGCTATAAAGAAGAAAGTTTGACTGTTATTACTGAAAATCCTTATCA
ACTGGTTGAGGACATTCAAGGCATTGGATTCAAAATGGCTGACAAATTAGCAGAACAAGTAGGTATTAACAGCGATGCTC
CTCAGCGTTTTCGTGCTGCTCTTGTTCATACTCTTTTAGAAACCTCTATTGACAAAGGTGACACCTATATTGAAGCCAAA
GAATTACTCGAAAAATCTCTTTTTATTCTTGAAGAGGTGAGACAAGTCGAACTGGATCCCAGTCAAATTGCTCAGGAACT
GACACAATTAATCTCCGAAAATAAGGTACAAAATATTGGTACTAAAATCTTTGATAATACGCTTTTTTATGCCGAATCAG
GCATTCATAAGCATCTTACCCGCATTCTGGATAGACCACTTGAAAAAGCGATCAGTAGCCAAGACATTCAAACTGAAATT
AAACATATTCAAGCAGAATTTAATATTAACTATGACAAGGCACAAAAAAATGCTATCCAAAAAGCCATCCAAAGTAAGGT
TTTCCTTTTAACAGGCGGTCCAGGAACCGGAAAAACGACTGTCATCAATGGAATTATTAAGGCTTATGCTAATTTGCATC
AAATTGACCTGCAAAAAAGTGACCGACCTATTATTCTGGCTGCCCCGACTGGTCGTGCTGCTAGACGGATGAATGAGCTA
ACAGGTTTACCTAGTGCCACCATTCACCGGCATTTAGGACTTAATGGTGATAGTGAATATCAGGCACTTGATGATTTTCT
GGATTGTGATCTCATTATTATTGACGAGTTTTCTATGGTTGATACTTGGCTAGCCAATCAATTGTTTAGTGCTATTGCTT
CAAATACACAAATTGTTATTGTTGGTGATAGCGATCAGCTCCCATCCGTCGGTCCAGGTCAAGTTTTGGCTGATTTACTG
AAAATAAATAGATTACCGCAAGTTTCCTTAACTAAAATATTCAGGCAATCTGAGGACTCAACCATTGTTACACTTGCTAA
CCAGATTCGCCAAGGTCGTCTACCAACTGATTTCACAGCTAAAAAGGCCGACCGTTCTTATTTTGAAGCGCAGAGCACTC
ACATTCCGCAAATGATTCAAAAGATTGTCAGTTCTGCCCTTAAAAGTGGTATAGATGCTCAGGAAATACAGATTTTAGCA
CCGATGTATCGTGGGCAAGCAGGTATTACGCATCTTAATAAACTGATGCAAGATTTGCTCAATCCTTTAAATAACCAGTT
AGAATTTCAATTTAATGACCTTCATTTTCGTAAGGGCGATAAAGTACTTCATCTTATCAACGATGCGCAAATTAACGTGT
TTAATGGTGACATTGGGTACATTACTGATCTTATTCCTGCAAAATATACAGAGTCCAAACAAGATGAAATGATTCTGGAT
TTTGATGGAACTGAGATTAACTATCCTCGCAATGAATGGTTGAAAATAACACTCGCTTACGCTATGAGTATCCACAAATC
TCAAGGCAGTGAATTTAAAGTAGTTATTCTTCCTGTCACACGCCAAAGCGGCAGACTTTTGCAACGCAATCTCATTTATA
CAGCTATCACACGCTCAAAAAGCAAACTTGTTATGTTGGGAGAAATTGCAGCCTTTGACAACGCCATCAAAAATGAAGGA
ACTAAAAGAAAAACTTATCTTATTGAACGCTTTAAGAAGGATGAATGCAGTGGCCACCATAACACCGAGAAAAATAAACA
AGGAGTAAAAGAAAGTGCAGCTATATTAAAAGAAGATTTTATTTTGACAGAAAGAAATATCTTAACGATTGACCCTATGA
TTGGCTTATCTCAAGCTGACATTGACTTATTTTTTAAGAAATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-641)

AAA domain (AAA_30)

(331-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.246

95.044

0.402

Multiple sequence alignment