Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   APQ13_RS08255 Genome accession   NZ_CP013237
Coordinates   1711129..1712394 (-) Length   421 a.a.
NCBI ID   WP_002262365.1    Uniprot ID   -
Organism   Streptococcus mutans strain NG8 isolate Dental Plaque     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1706129..1717394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ13_RS10505 (APQ13_08215) - 1707099..1707778 (+) 680 Protein_1603 4'-phosphopantetheinyl transferase family protein -
  APQ13_RS10300 - 1708501..1708707 (-) 207 Protein_1604 MerR family DNA-binding transcriptional regulator -
  APQ13_RS08240 (APQ13_08225) - 1708806..1710722 (+) 1917 WP_002268300.1 heavy metal translocating P-type ATPase -
  APQ13_RS08255 (APQ13_08235) rarA 1711129..1712394 (-) 1266 WP_002262365.1 replication-associated recombination protein A Machinery gene
  APQ13_RS08260 (APQ13_08240) - 1712384..1712875 (-) 492 WP_002266873.1 GNAT family N-acetyltransferase -
  APQ13_RS08265 (APQ13_08245) - 1713023..1713493 (+) 471 WP_002262363.1 DUF3013 family protein -
  APQ13_RS08270 (APQ13_08250) - 1713506..1713802 (+) 297 WP_002270095.1 LlsX family protein -
  APQ13_RS08275 (APQ13_08255) prmA 1714031..1714984 (+) 954 WP_002289503.1 50S ribosomal protein L11 methyltransferase -
  APQ13_RS08280 (APQ13_08260) - 1714985..1715728 (+) 744 WP_002289504.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  APQ13_RS08285 (APQ13_08265) - 1715790..1716086 (+) 297 WP_002262359.1 LacI family DNA-binding transcriptional regulator -
  APQ13_RS08290 (APQ13_08270) - 1716114..1716308 (-) 195 WP_002268480.1 hypothetical protein -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46370.74 Da        Isoelectric Point: 6.5113

>NTDB_id=139717 APQ13_RS08255 WP_002262365.1 1711129..1712394(-) (rarA) [Streptococcus mutans strain NG8 isolate Dental Plaque]
MPNNLALRMRPRDISEVIGQKHLVGQGKIISRMVTANRLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATTDTKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGQIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAMQ
AALTDTERGFDFEVKLDDDALDFIAQATNGDLRSAYNSLDLAIMSTQPDDNGSRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLIEAGDLPSLARRLTIIAYEDIGLANPDAQIHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKAIADLHKSGTIPIPRHLRDGHYAGSKELGNAQDYLYPHAYPEKWVKQQYLPDKLKGANYFTA
NETGKYERALGANKDKIDKLS

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=139717 APQ13_RS08255 WP_002262365.1 1711129..1712394(-) (rarA) [Streptococcus mutans strain NG8 isolate Dental Plaque]
ATGCCAAATAACCTCGCACTTCGTATGCGCCCTCGAGATATCTCTGAAGTTATCGGACAAAAGCATCTAGTCGGTCAAGG
CAAGATTATTTCGCGAATGGTCACTGCTAACCGTCTGTCTTCCATGATTCTTTATGGCCCTCCCGGAATTGGAAAAACCT
CAATCGCTTCTGCCATCGCTGGTACAACCAAATTTGCCTTTCGTACCTTCAATGCAACAACCGACACTAAAAAACGCCTG
CAGGAAATTGCTGAAGAAGCTAAATTTTCAGGTGGTTTGGTCTTGCTCCTAGATGAAATTCATCGTCTAGATAAAACTAA
GCAAGATTTTCTTCTCCCCTTGTTGGAAAACGGACAAATTATCATGATTGGCGCAACCACTGAAAATCCCTTTTTCTCTG
TCACCCCTGCCATTCGCTCGCGTGTTCAGATTTTTGAGTTAGAGCCATTATCAAATGAGGATATCAAAAAAGCTATGCAA
GCAGCTCTGACAGATACAGAGCGCGGCTTTGATTTTGAAGTCAAATTAGATGATGATGCTCTTGACTTCATTGCGCAAGC
CACCAATGGCGACTTGCGCTCTGCCTATAATTCTCTTGATTTAGCCATCATGTCCACCCAGCCAGATGACAATGGTAGTC
GCCACATCACCTTAGACACTGTTGAAAACAGCCTACAGCGCAGCTACATTACCATGGACAAGGATGGTGATGGCCACTAT
GATGTCTTGTCCGCCTTACAAAAATCTATTCGCGGTTCAGATGTCAATGCCAGCCTTCACTATGCTGCCAGATTAATCGA
AGCTGGTGATCTGCCAAGTCTAGCTAGACGTTTAACCATTATTGCTTACGAAGATATCGGCTTAGCCAATCCTGATGCAC
AGATTCATACAGTGACAGCGCTGGAAGCAGCCCAAAAAATTGGTTTTCCTGAAGCCCGCATTTTAATTGCCAATGTTGTT
ATTGATTTAGCACTCTCACCTAAGTCTAATTCCGCTTATGTTGCTATGGACAAGGCCATTGCAGATCTTCATAAAAGCGG
CACGATCCCTATTCCTCGCCACTTACGTGATGGTCATTACGCTGGCAGTAAAGAATTGGGCAATGCCCAAGATTATCTCT
ACCCGCATGCCTATCCGGAAAAATGGGTTAAGCAGCAATATTTACCAGACAAACTCAAAGGAGCTAACTATTTTACTGCC
AATGAAACAGGTAAATACGAACGGGCACTGGGGGCTAACAAAGACAAGATTGATAAACTTTCATAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-414)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.135

98.812

0.584