Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HSISS4_RS09400 Genome accession   NZ_CP013216
Coordinates   2027994..2029262 (-) Length   422 a.a.
NCBI ID   WP_021144717.1    Uniprot ID   -
Organism   Streptococcus salivarius strain HSISS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2022994..2034262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSISS4_RS09370 (HSISS4_01827) - 2024301..2024711 (-) 411 WP_014635145.1 membrane protein -
  HSISS4_RS09375 (HSISS4_01828) - 2024708..2025142 (-) 435 WP_021144715.1 low molecular weight protein-tyrosine-phosphatase -
  HSISS4_RS09380 (HSISS4_01829) - 2025418..2026710 (-) 1293 WP_014632520.1 adenylosuccinate synthase -
  HSISS4_RS09385 (HSISS4_01830) - 2026946..2027452 (-) 507 WP_037620457.1 DNA topology modulation protein -
  HSISS4_RS09400 (HSISS4_01831) rarA 2027994..2029262 (-) 1269 WP_021144717.1 replication-associated recombination protein A Machinery gene
  HSISS4_RS09405 (HSISS4_01832) rpmB 2029433..2029621 (+) 189 WP_002885786.1 50S ribosomal protein L28 -
  HSISS4_RS09410 (HSISS4_01833) - 2029748..2030014 (+) 267 WP_002885737.1 IreB family regulatory phosphoprotein -
  HSISS4_RS09415 (HSISS4_01834) ruvX 2030014..2030433 (+) 420 WP_002885830.1 Holliday junction resolvase RuvX -
  HSISS4_RS09420 (HSISS4_01835) - 2030539..2030844 (+) 306 WP_002887079.1 DUF1292 domain-containing protein -
  HSISS4_RS09425 (HSISS4_01836) - 2031057..2032703 (+) 1647 WP_021144718.1 hypothetical protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46598.02 Da        Isoelectric Point: 5.8803

>NTDB_id=139543 HSISS4_RS09400 WP_021144717.1 2027994..2029262(-) (rarA) [Streptococcus salivarius strain HSISS4]
MPDNLALRMRPRTISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDVKEAIL
GVLEDKERGFDFDVQLDEDALDFIATATNGDLRSAYNSLDLAVMSTPASEDGLRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKVGFPEARILIANVV
VDLALSPKSNSAYMAMDAALADLRKSGNLPIPRHLRDGHYAGSKELGNAQDYKYPHAYPEKWVKQQYLPDKLRSVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=139543 HSISS4_RS09400 WP_021144717.1 2027994..2029262(-) (rarA) [Streptococcus salivarius strain HSISS4]
ATGCCAGATAATCTTGCTCTACGCATGCGTCCACGTACAATTTCAGAGGTGATTGGTCAGAAGCATTTGGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAAGCGAATATGCTGTCGTCAATGATTCTCTACGGGCCACCAGGAATCGGGAAGACCT
CAATAGCTAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACCTTTAATGCTACTGTTGATAGCAAGAAACGCCTG
CAGGAAATTGCGGAAGAGGCTAAATTTTCAGGTGGCTTAGTTCTGCTTCTAGATGAGATTCATCGTTTGGATAAAGCTAA
ACAAGACTTTTTATTACCACTCTTAGAGAATGGTAATATTATCATGATTGGGGCTACAACGGAGAATCCGTTTTTTTCTG
TCACACCAGCCATCCGTAGTCGTGTACAAATATTTGAGTTGGAACCACTCTCTAACGAGGATGTTAAGGAAGCTATCCTA
GGTGTTCTAGAGGACAAGGAGCGTGGCTTTGACTTTGATGTCCAGTTAGATGAGGATGCTCTAGATTTTATTGCTACGGC
TACTAATGGTGATTTACGTTCGGCTTATAATTCCTTAGATTTAGCTGTCATGTCGACGCCAGCTTCAGAAGATGGGCTTC
GCCATATTACTTTAGATACAGTGGAAAATAGTTTACAACGTAGCTATATCACCATGGATAAAGACGGTGATGGACACTAT
GATGTGCTTTCTGCTTTGCAAAAATCTATTCGAGGTTCTGATGTTAATGCCAGTCTTCACTATGCAGCACGTTTGGTTGA
AGCAGGAGATCTTCCTAGTCTAGCACGTCGCTTGACTGTGATTGCGTACGAGGATATTGGTTTAGCTAATCCTGATGCGC
AAGTTCACACGGTTACAGCTTTGGAAGCTGCACAGAAAGTAGGTTTCCCAGAGGCGCGAATTTTGATTGCCAATGTAGTT
GTTGACTTAGCTTTATCTCCTAAGTCGAATTCGGCTTATATGGCTATGGATGCTGCCTTGGCAGACCTTAGAAAATCAGG
GAATTTACCGATTCCTCGTCATTTGAGAGATGGACACTATGCTGGAAGCAAGGAACTGGGCAATGCACAAGATTACAAGT
ATCCCCATGCTTATCCTGAAAAGTGGGTCAAACAACAATATCTTCCGGATAAATTAAGAAGTGTAAATTATTTCCAACCC
AATGAAACCGGGAAATATGAAAGAGCTCTTGGAGCTAATAAAGAACGGATCGATAAGTTATCTAGGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.905

99.289

0.595