Detailed information NTG0139527

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: HSISS4_RS08510
• Genome accession: NZ_CP013216
• Coordinates: 1873885..1876389 (+)
• Length: 834 a.a.
• NCBI ID: WP_021143602.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain HSISS4
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1868885..1881389

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HSISS4_RS08490 (HSISS4_01670)	-	1871104..1871646 (-)	543	WP_021143604.1	CvpA family protein	-
HSISS4_RS08495 (HSISS4_01671)	zapA	1871643..1871957 (-)	315	WP_004183554.1	cell division protein ZapA	-
HSISS4_RS08500 (HSISS4_01672)	rnhC	1872274..1873164 (+)	891	WP_037620139.1	ribonuclease HIII	-
HSISS4_RS08505 (HSISS4_01673)	lepB	1873183..1873824 (+)	642	WP_002884233.1	signal peptidase I	-
HSISS4_RS08510 (HSISS4_01674)	recD/recD2/recDB	1873885..1876389 (+)	2505	WP_021143602.1	ATP-dependent RecD-like DNA helicase	Machinery gene
HSISS4_RS08515 (HSISS4_01675)	-	1876441..1876767 (-)	327	WP_014635057.1	AzlD domain-containing protein	-
HSISS4_RS08520 (HSISS4_01676)	-	1876754..1877446 (-)	693	WP_014635058.1	AzlC family ABC transporter permease	-
HSISS4_RS08525 (HSISS4_01677)	tsaD	1877498..1878511 (-)	1014	WP_021143601.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
HSISS4_RS08530 (HSISS4_01678)	rimI	1878511..1878966 (-)	456	WP_037620135.1	ribosomal protein S18-alanine N-acetyltransferase	-
HSISS4_RS08535 (HSISS4_01679)	tsaB	1878926..1879612 (-)	687	WP_021143599.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
HSISS4_RS08540 (HSISS4_01680)	-	1879873..1880103 (+)	231	WP_002884752.1	DNA-dependent RNA polymerase subunit epsilon	-

Sequence

Protein

• Length: 834 a.a.
• Molecular weight: 94012.24 Da
• Isoelectric Point: 4.4728

>NTDB_id=139527 HSISS4_RS08510 WP_021143602.1 1873885..1876389(+) (recD/recD2/recDB) [Streptococcus salivarius strain HSISS4]
MQEFYFSGTIERVIFENASNFFRILLLEIDETDSDFEDYEIIVTGTMGDVMEGEDYTFWGQLTNHPKYGEQLQMTRYERS
KPSASGLIKYFASDNFKGIGKKTAERIVEIYGEDPIDKILEDPSKLEQISNLSKVNREAFVAKLKINYGTEQILSKLSSY
GLTPKAASQIFNQYKEESLNLIEEHPYLLVEEVQGIGFKIADQLAERLGIASDAPERLRAALIHCLLEASMEEGDTYIEA
KALLERTIILLESARQIELDPALVAKELTNLIQEDKVQNVETKIFDNTLYFAEQGIYTHLTRIMKDQPDISAEDKIQASL
EEVEEELGITYDKVQKDAIIKALQSKVFILTGGPGTGKTTVINGIIKTYADLHGLDLKKSDLPIILAAPTGRAARRMNEL
TQLPSATIHRHLGLNSEDDFKTLEDYLDCDLIIIDEFSMVDTWLANQLFESISDSTQVIIVGDQDQLPSVGPGQVLADLL
QIDDLPKVSLTKIFRQSEDSTIVTLASQMRQGQLPADFTEKKADRSYFEANTNHIPQMVPKIVSAAIKSGIAAQDVQILA
PMYRGQAGINNLNTIMQDLLNHQEKANQFAFNDIFFRKNDKILHLVNDTELNVFNGDIGIITDLIPGKYTESKQDEIYMS
FDGNEVIYPRNEWNKITLAYAMSIHKSQGSEFPVVILPITRQSGRMLQRNLIYTAITRAKSKLVMLGEIAAFDYAVRNEG
AKRNTFLIQRFEQTYTQAVDKSVEKIVKNQATGASNQTKTKNNDPSETLENKDFSENINPSQDLVNTYSQPVDKSVNKPV
QTEENYRLTEDNWSTIDPMIGLSEDDIAAFFNNN

Nucleotide

• Length: 2505 bp

>NTDB_id=139527 HSISS4_RS08510 WP_021143602.1 1873885..1876389(+) (recD/recD2/recDB) [Streptococcus salivarius strain HSISS4]
ATGCAAGAATTTTATTTTTCAGGAACTATCGAACGCGTTATTTTCGAAAACGCTAGTAATTTTTTTCGTATCCTACTCTT
AGAAATTGACGAAACAGACAGTGATTTTGAGGACTATGAAATCATTGTTACAGGAACCATGGGAGATGTCATGGAAGGTG
AAGATTATACCTTCTGGGGTCAGTTAACCAATCATCCCAAATATGGTGAACAACTCCAAATGACACGCTACGAACGGTCA
AAACCTTCTGCCAGCGGTCTTATCAAGTATTTCGCTAGCGACAATTTTAAGGGGATTGGTAAGAAAACAGCTGAGCGTAT
TGTCGAGATCTATGGCGAAGACCCAATTGACAAGATTCTCGAAGATCCTAGCAAGTTAGAGCAGATTTCCAACCTTTCAA
AGGTAAACCGAGAAGCCTTCGTTGCAAAGTTAAAAATCAACTATGGAACCGAACAAATCTTGTCCAAACTTTCCAGCTAT
GGACTCACACCAAAAGCTGCCTCACAAATTTTCAACCAATATAAGGAAGAATCGCTCAACCTTATCGAGGAACACCCTTA
TCTCTTGGTAGAGGAAGTTCAAGGAATCGGATTTAAAATAGCTGACCAACTGGCCGAACGCCTAGGAATTGCTAGTGATG
CTCCTGAGCGTTTACGAGCTGCCTTGATTCATTGTCTGCTAGAAGCCAGTATGGAAGAAGGCGACACCTACATCGAAGCA
AAAGCCTTGCTCGAACGAACTATCATCCTTTTGGAAAGTGCTCGCCAGATTGAACTGGACCCTGCCTTGGTCGCTAAGGA
ATTAACCAATCTCATCCAAGAGGATAAGGTGCAAAATGTAGAGACTAAAATCTTTGATAATACCCTATATTTTGCGGAAC
AAGGCATCTATACCCACCTAACTCGTATCATGAAAGACCAACCTGACATCAGTGCTGAGGACAAAATCCAAGCAAGTCTT
GAAGAGGTGGAAGAGGAGCTTGGTATTACTTATGATAAGGTGCAAAAAGATGCCATTATCAAAGCCCTACAAAGCAAGGT
CTTCATCCTAACAGGTGGTCCCGGAACAGGGAAAACCACTGTTATTAACGGCATTATTAAAACCTATGCCGACCTTCATG
GTCTAGATCTCAAAAAGTCTGATTTGCCTATTATTTTAGCGGCGCCAACGGGACGGGCTGCTCGTCGAATGAACGAACTC
ACCCAACTCCCTAGTGCCACTATCCATAGACATTTGGGACTCAATAGCGAGGACGATTTCAAGACCTTAGAGGACTATCT
CGATTGCGACTTGATTATCATCGATGAGTTTTCTATGGTTGATACTTGGTTGGCCAATCAACTCTTTGAAAGTATCTCTG
ATTCAACCCAAGTCATCATTGTGGGTGACCAAGACCAACTGCCTTCCGTAGGTCCTGGCCAGGTCTTGGCTGACCTTTTG
CAGATTGATGACTTGCCTAAGGTTTCTCTGACCAAAATTTTCAGACAATCCGAGGACTCCACCATCGTTACCTTAGCTAG
CCAGATGCGACAAGGCCAACTACCCGCTGATTTCACAGAGAAAAAGGCTGACCGCTCTTACTTTGAGGCCAATACCAACC
ATATTCCACAGATGGTTCCTAAAATTGTCTCTGCCGCTATAAAGAGTGGTATTGCTGCTCAGGATGTGCAAATTTTAGCC
CCCATGTACCGAGGACAGGCTGGTATCAACAATCTCAATACCATTATGCAGGACCTACTTAATCATCAAGAAAAGGCCAA
TCAGTTTGCCTTTAATGATATTTTCTTCCGTAAGAACGACAAAATTCTCCATCTGGTCAACGATACCGAACTCAATGTCT
TCAATGGCGACATCGGCATCATTACTGATCTCATCCCTGGTAAATATACTGAAAGCAAGCAGGACGAAATTTACATGTCC
TTTGATGGCAATGAGGTTATCTATCCTCGTAACGAATGGAATAAGATTACTCTGGCCTATGCCATGTCAATCCACAAATC
TCAAGGGAGTGAGTTCCCAGTCGTTATCCTTCCCATCACACGACAAAGTGGACGTATGCTACAACGTAACCTCATCTACA
CCGCTATCACACGTGCCAAGAGTAAGCTAGTCATGTTAGGGGAAATCGCAGCCTTTGATTATGCCGTTCGCAACGAAGGA
GCTAAACGAAATACTTTTCTCATCCAACGTTTTGAACAAACTTATACACAAGCTGTTGATAAGTCTGTCGAAAAGATTGT
TAAAAACCAGGCAACAGGCGCCTCCAATCAAACAAAAACGAAAAACAACGACCCCTCAGAAACCCTTGAAAACAAAGACT
TTTCGGAAAATATCAATCCATCCCAAGATCTTGTTAACACTTATTCACAGCCTGTGGATAAGTCTGTTAACAAACCTGTG
CAAACAGAAGAAAACTATCGTTTAACTGAAGATAATTGGTCAACTATAGATCCAATGATTGGGCTCAGTGAAGACGATAT
TGCTGCCTTTTTTAACAACAACTAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (147-237)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (659-705)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (572-638)

• AAA domain (AAA_30) (331-525)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	44.933	89.928	0.404