Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HSISS4_RS07910 Genome accession   NZ_CP013216
Coordinates   1743788..1744573 (-) Length   261 a.a.
NCBI ID   WP_002884784.1    Uniprot ID   -
Organism   Streptococcus salivarius strain HSISS4     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1738788..1749573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSISS4_RS07890 (HSISS4_01544) - 1739287..1740168 (-) 882 WP_021147408.1 glycosyltransferase family 2 protein -
  HSISS4_RS07895 (HSISS4_01545) - 1740172..1741380 (-) 1209 WP_021143694.1 glycosyltransferase -
  HSISS4_RS07900 (HSISS4_01546) - 1741575..1743014 (-) 1440 WP_021143693.1 6-phospho-beta-glucosidase -
  HSISS4_RS07905 (HSISS4_01547) - 1743170..1743721 (-) 552 WP_021143692.1 cysteine hydrolase family protein -
  HSISS4_RS07910 (HSISS4_01548) codY 1743788..1744573 (-) 786 WP_002884784.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HSISS4_RS07915 (HSISS4_01549) - 1744841..1746055 (-) 1215 WP_002884715.1 pyridoxal phosphate-dependent aminotransferase -
  HSISS4_RS07920 (HSISS4_01550) - 1746415..1746867 (+) 453 WP_002891687.1 universal stress protein -
  HSISS4_RS07925 (HSISS4_01551) - 1746947..1747699 (-) 753 WP_002884718.1 hypothetical protein -
  HSISS4_RS07930 (HSISS4_01552) pflA 1747769..1748569 (-) 801 WP_021143691.1 pyruvate formate-lyase-activating protein -
  HSISS4_RS07935 (HSISS4_01553) - 1748756..1749496 (-) 741 WP_021143690.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28829.85 Da        Isoelectric Point: 4.3715

>NTDB_id=139517 HSISS4_RS07910 WP_002884784.1 1743788..1744573(-) (codY) [Streptococcus salivarius strain HSISS4]
MANLLAKTRKITSILQRSVDSLEGDLPYNNMAAQLADIIDCNAAIVNGGGALLGFAMKYKTNNDRVEEFFEAKQLPEEYT
RGISRVYDTQENIGIDSDLTIFPVESKDDFPDGLTTIAPIYGGGMRLGSFIIWRNDHDFVDEDLILVEIASTVVGLQLLN
LQTENLEETIRKQTAINMAINTLSYSEIKAVSAILNELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLNEGIYDKLKEYE

Nucleotide


Download         Length: 786 bp        

>NTDB_id=139517 HSISS4_RS07910 WP_002884784.1 1743788..1744573(-) (codY) [Streptococcus salivarius strain HSISS4]
ATGGCAAATTTGCTGGCTAAAACACGTAAAATTACATCTATCTTGCAACGCTCAGTAGACAGCTTGGAAGGAGATCTTCC
ATACAACAATATGGCTGCTCAATTGGCGGATATCATTGATTGTAACGCTGCTATCGTTAATGGTGGTGGTGCTCTCCTTG
GTTTTGCCATGAAGTACAAAACCAACAATGATCGTGTGGAAGAGTTTTTTGAAGCCAAACAACTTCCAGAAGAATACACA
CGTGGTATCAGCCGTGTTTATGACACTCAAGAAAACATTGGTATTGACAGTGACTTGACCATTTTCCCTGTGGAATCAAA
AGACGACTTCCCAGATGGTTTGACTACGATTGCCCCTATCTATGGTGGTGGTATGCGTCTTGGTTCTTTCATCATTTGGC
GTAACGATCATGACTTTGTAGATGAAGATCTTATCTTGGTTGAGATTGCCTCTACAGTAGTTGGGTTGCAGTTGTTGAAT
CTTCAAACAGAGAACTTGGAAGAAACAATTCGTAAACAGACAGCTATTAACATGGCTATTAATACCTTGTCTTACTCGGA
AATCAAGGCAGTTTCAGCTATCTTGAATGAGTTGGACGGTTTGGAAGGCCGCTTGACAGCGTCTGTTATCGCTGACCGTA
TTGGAATCACACGTTCAGTTATCGTTAATGCCCTTCGTAAGTTGGAATCAGCTGGTATTATTGAGAGCCGTTCACTCGGT
ATGAAAGGGACTTATCTTAAAGTCCTTAACGAAGGTATCTACGATAAATTGAAAGAATACGAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

64.981

98.467

0.64
  codY Bacillus subtilis subsp. subtilis str. 168

53.036

94.636

0.502