Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HSISS4_RS05765 Genome accession   NZ_CP013216
Coordinates   1209985..1211733 (-) Length   582 a.a.
NCBI ID   WP_021144020.1    Uniprot ID   -
Organism   Streptococcus salivarius strain HSISS4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1204985..1216733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSISS4_RS05740 (HSISS4_01111) dltA 1205573..1207123 (-) 1551 WP_004182015.1 D-alanine--poly(phosphoribitol) ligase subunit DltA -
  HSISS4_RS05745 (HSISS4_01112) - 1207132..1207263 (-) 132 WP_002885174.1 teichoic acid D-Ala incorporation-associated protein DltX -
  HSISS4_RS10195 (HSISS4_01113) - 1207525..1208490 (-) 966 WP_002890057.1 IS3 family transposase -
  HSISS4_RS05755 (HSISS4_01114) - 1208487..1209164 (-) 678 WP_059749084.1 helix-turn-helix domain-containing protein -
  HSISS4_RS05760 (HSISS4_01115) tnpA 1209348..1209821 (-) 474 WP_048790626.1 IS200/IS605 family transposase -
  HSISS4_RS05765 (HSISS4_01116) rcrQ 1209985..1211733 (-) 1749 WP_021144020.1 ABC transporter ATP-binding protein Regulator
  HSISS4_RS05770 (HSISS4_01117) - 1211723..1213462 (-) 1740 WP_021144019.1 ABC transporter ATP-binding protein -
  HSISS4_RS05775 (HSISS4_01118) - 1213493..1214104 (-) 612 WP_037620261.1 lysozyme family protein -
  HSISS4_RS05780 (HSISS4_01119) - 1214106..1215083 (-) 978 WP_004182031.1 nucleoid-associated protein -
  HSISS4_RS05785 (HSISS4_01120) glyA 1215089..1216339 (-) 1251 WP_021144018.1 serine hydroxymethyltransferase -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 65353.73 Da        Isoelectric Point: 6.6223

>NTDB_id=139501 HSISS4_RS05765 WP_021144020.1 1209985..1211733(-) (rcrQ) [Streptococcus salivarius strain HSISS4]
MKARNNKSTLKRLSRDILSQRYLFALATVGTIIQVALTVYLPILIGDAVDAVLKMNAVLLMSRLIWQMLVVILANSAIQW
LNPLIYNRLIYSYSESLRERVMMKIHAMPLSYLDRQGTGDMVSRVTTDSDQLNNGLLMVFNQFFVGLLTIFVIIITMARL
DWFMMLLVLVMTPLSMLVARFIAKKSYQLYRNQTKWRGVQTQLIEESLTQEALVQSLNAQDQMVRSFKDVNGKYADYSQG
AIFYSSAVNPATRFVNSLIYALIAGVGAYRIMSGGAFTVGQLTTFLNYVTQYTKPFNDISSVLSELQSALACADRLYMIL
DEDEIPETGNAILEEADVQGHFQFEHVQFGYLPNKPLIKDLSIDIPAASTVAIVGPTGAGKSTLINLLMRFYDLDKGQIL
LDGRPITDYTRESLRKQIGMVLQETWLEVGTIHDNIAYGNPEASREEVIAAAKAANADFFIQQLPQGYDTYLNDAGQSLS
QGQRQLLTIARIFVNVPKILILDEATSSIDTRTELLIQEAFAKLMKGRTSFIIAHRLSTIENADLILVMNNGDIVEHGTH
EQLMQAKGMYYRMQTAQKTQNS

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=139501 HSISS4_RS05765 WP_021144020.1 1209985..1211733(-) (rcrQ) [Streptococcus salivarius strain HSISS4]
ATGAAGGCTAGAAATAATAAATCAACGCTTAAACGTTTAAGTAGAGATATCTTAAGTCAGCGCTACCTCTTTGCCTTAGC
AACTGTTGGGACCATTATTCAAGTTGCCTTAACGGTTTACTTACCTATCTTAATTGGTGATGCAGTGGACGCTGTTCTTA
AGATGAACGCCGTTCTATTGATGTCACGTTTAATTTGGCAGATGCTTGTAGTTATCTTAGCTAATAGTGCAATCCAGTGG
CTTAACCCTTTGATTTATAATCGATTAATTTATTCATATAGCGAAAGTTTACGTGAACGAGTCATGATGAAAATTCATGC
TATGCCACTTAGTTACCTTGATCGTCAAGGAACTGGAGACATGGTTAGCCGTGTGACTACAGATAGCGATCAGTTAAACA
ACGGACTTCTCATGGTCTTTAACCAATTTTTCGTTGGGCTTTTGACTATCTTTGTCATAATCATTACCATGGCTCGGTTA
GACTGGTTCATGATGCTCTTAGTTCTAGTGATGACGCCTCTGTCAATGCTTGTGGCACGTTTTATCGCAAAGAAGAGCTA
TCAACTCTATCGCAATCAAACTAAATGGCGAGGTGTGCAGACTCAGTTGATTGAGGAAAGTCTGACTCAAGAAGCTTTAG
TACAAAGTCTAAATGCTCAAGACCAGATGGTTAGGAGTTTTAAAGACGTCAATGGTAAGTATGCTGATTATTCACAGGGT
GCTATCTTTTATTCGTCAGCGGTTAACCCAGCTACACGTTTTGTCAATAGTCTGATCTATGCTCTTATTGCAGGTGTTGG
AGCCTATCGAATCATGTCAGGTGGTGCTTTTACAGTGGGACAATTGACTACCTTCCTAAATTATGTGACTCAGTATACGA
AACCTTTTAATGATATTTCATCTGTTCTATCTGAACTTCAAAGTGCTTTGGCCTGTGCTGATCGCCTTTATATGATTTTA
GATGAAGATGAAATACCAGAAACGGGTAATGCGATTTTAGAAGAAGCAGATGTTCAGGGACATTTTCAATTTGAGCATGT
TCAATTTGGTTATTTGCCTAATAAACCTCTTATAAAGGATTTGAGCATTGATATACCTGCGGCAAGTACTGTTGCCATTG
TTGGCCCTACAGGAGCAGGCAAATCTACCCTCATTAACCTGCTCATGCGTTTCTATGATTTGGACAAGGGTCAAATTTTA
CTAGACGGTAGACCTATTACAGATTATACTCGTGAGAGTCTTCGGAAACAGATTGGGATGGTCTTGCAGGAAACTTGGCT
TGAGGTTGGCACTATTCATGATAATATTGCCTATGGTAATCCAGAAGCCAGTCGTGAAGAAGTCATAGCAGCGGCCAAGG
CTGCCAATGCAGATTTCTTTATTCAGCAGTTGCCTCAAGGCTACGACACCTACTTGAATGATGCGGGGCAATCCCTTTCT
CAGGGGCAACGTCAGCTTTTGACCATTGCTCGCATATTTGTCAATGTGCCTAAAATCTTAATCTTGGATGAAGCCACTTC
TAGTATCGATACCCGTACAGAGCTCCTCATTCAAGAGGCCTTCGCTAAATTAATGAAAGGTAGAACAAGTTTCATCATTG
CTCATCGATTGTCTACCATCGAAAATGCGGACCTTATTTTGGTCATGAATAATGGAGATATCGTTGAACACGGAACCCAT
GAACAACTGATGCAAGCTAAGGGAATGTACTATCGTATGCAGACGGCCCAAAAGACACAAAATAGTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(359-507)

ABC transporter transmembrane region (ABC_membrane)

(25-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.055

100

0.383

Multiple sequence alignment