Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HSISS4_RS02525 Genome accession   NZ_CP013216
Coordinates   511736..513523 (+) Length   595 a.a.
NCBI ID   WP_021144541.1    Uniprot ID   -
Organism   Streptococcus salivarius strain HSISS4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 506736..518523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSISS4_RS02510 (HSISS4_00454) - 507250..507843 (+) 594 WP_021144545.1 type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein -
  HSISS4_RS02515 (HSISS4_00455) - 508071..509624 (+) 1554 WP_059749102.1 BCCT family transporter -
  HSISS4_RS10295 - 509634..509789 (+) 156 Protein_457 LysR family transcriptional regulator -
  HSISS4_RS02520 (HSISS4_00456) rcrP 509987..511723 (+) 1737 WP_021144542.1 ABC transporter ATP-binding protein Regulator
  HSISS4_RS02525 (HSISS4_00457) rcrQ 511736..513523 (+) 1788 WP_021144541.1 ABC transporter ATP-binding protein Regulator
  HSISS4_RS02530 (HSISS4_00458) queA 513621..514664 (-) 1044 WP_021144540.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  HSISS4_RS02535 (HSISS4_00459) - 514817..515518 (+) 702 WP_021144539.1 glucosamine-6-phosphate deaminase -
  HSISS4_RS02540 (HSISS4_00460) - 515527..515874 (+) 348 WP_021144538.1 DUF2200 domain-containing protein -
  HSISS4_RS02545 (HSISS4_00461) - 516044..517027 (+) 984 WP_021144537.1 rhodanese-related sulfurtransferase -
  HSISS4_RS02550 (HSISS4_00462) - 517145..517828 (+) 684 WP_002890291.1 VIT1/CCC1 transporter family protein -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 66404.49 Da        Isoelectric Point: 5.2481

>NTDB_id=139477 HSISS4_RS02525 WP_021144541.1 511736..513523(+) (rcrQ) [Streptococcus salivarius strain HSISS4]
MKKNKTKTSHSSSFGRLWSYLQAYRFPLYLAIFLKIVSVIMSVLEPVVIGLAITELTKNTLAIIKGVEGAHINVSYVGLV
LVVYLLRGLIYELAAYYSNYFMTNAVQATVQDMRNEMTEKINRTSVSYFDKHQFGDLLGRFTSDVETVSNALQQSFLQVV
NAVFTLALVIGTVLYLNLQLGAIVVITIPITFFGARFIMSKSQPYFKQQADALGTLNGFVQENLTGFNVLKLFGREDRSL
DDFKEITEDLQKVGFKANFISGLMMPVLNGLSDLTYLIVAVLGGLQVLAGRLTIGNMQAFVQYVWQINQPIQNLTQLAGQ
LQSAKSSLDRIFQLMDEPDEANDATEVLDGDLTGQVSFKHVDFQYVADKPLIRDFNLEVNPGEMVAIVGPTGAGKSTIIN
LLMRFYDVTAGSISVDGHDIRNLSRQDYRKQFGMVLQDAWLFEGTIKENLRFGNLEATDEEIVEAAKAANVDHFIRTLPG
GYNMEMNQESSNISLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMKTLMQGRTSFVIAHRLSTIQEADKI
LVLKDGQIIEQGNHESLLADKGFYYDLYNSQFAEK

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=139477 HSISS4_RS02525 WP_021144541.1 511736..513523(+) (rcrQ) [Streptococcus salivarius strain HSISS4]
ATGAAGAAAAATAAAACAAAAACAAGTCATTCCTCAAGTTTTGGCCGCCTTTGGTCCTACTTGCAGGCTTATCGTTTCCC
ACTTTACCTAGCCATTTTCTTGAAAATTGTTAGTGTCATCATGAGTGTCCTTGAACCCGTAGTCATTGGTTTAGCTATTA
CCGAGTTGACTAAAAATACGCTGGCCATCATCAAAGGTGTGGAAGGCGCTCATATCAACGTCTCCTATGTTGGTTTGGTT
TTGGTTGTTTATCTCTTGCGTGGTCTTATTTATGAGTTGGCTGCTTATTATTCCAACTATTTTATGACCAATGCTGTGCA
AGCAACGGTTCAAGATATGCGAAATGAGATGACCGAGAAAATCAATCGTACCTCAGTGTCATACTTCGATAAGCACCAGT
TTGGGGACCTCTTGGGACGCTTTACCAGTGACGTCGAGACAGTATCTAATGCCTTGCAGCAGTCATTTTTGCAGGTTGTT
AATGCCGTCTTTACTCTAGCCTTGGTTATTGGAACAGTGCTTTACCTTAATCTTCAATTGGGAGCTATAGTTGTCATCAC
TATTCCGATTACATTCTTTGGTGCCCGCTTTATCATGAGTAAGTCTCAGCCCTACTTTAAACAACAGGCTGATGCTCTAG
GTACTCTTAATGGTTTTGTTCAAGAAAATCTGACCGGTTTCAATGTGCTTAAGCTATTTGGCCGTGAGGATAGATCCTTG
GATGATTTTAAAGAAATCACGGAAGACCTTCAGAAGGTAGGTTTTAAGGCTAATTTCATTTCAGGACTCATGATGCCTGT
TCTTAACGGTTTATCTGACTTGACCTATCTAATTGTCGCTGTTCTAGGTGGTTTGCAAGTCTTGGCTGGTCGCTTGACGA
TTGGTAATATGCAGGCCTTTGTTCAGTATGTTTGGCAGATTAACCAACCTATTCAGAACTTGACTCAGTTGGCTGGACAA
TTGCAAAGTGCTAAATCTTCCTTGGACCGTATTTTCCAACTGATGGATGAACCAGACGAGGCTAATGATGCTACTGAAGT
GCTTGACGGAGATTTGACTGGCCAAGTTAGCTTTAAGCATGTGGACTTCCAGTATGTGGCCGATAAACCTTTGATTCGTG
ACTTTAATCTTGAAGTCAATCCTGGCGAAATGGTCGCCATTGTCGGCCCAACTGGTGCCGGAAAATCAACGATTATCAAT
CTTCTCATGCGTTTCTATGATGTGACGGCTGGTTCTATCTCGGTTGATGGTCATGATATTCGTAACTTATCACGTCAGGA
TTATCGTAAACAGTTTGGTATGGTGCTTCAGGATGCTTGGCTCTTTGAAGGAACTATCAAGGAAAATCTTCGCTTTGGTA
ATCTTGAGGCAACTGATGAAGAAATTGTTGAAGCCGCTAAGGCTGCCAATGTGGACCACTTTATCCGTACGCTACCTGGC
GGTTACAACATGGAAATGAACCAGGAATCAAGTAACATTTCACTGGGACAAAAGCAACTTTTGACCATTGCGCGTGCGCT
TTTGGCTGATCCTAAAATCTTGATTTTGGACGAGGCAACCTCATCAGTTGATACCCGTTTGGAACTCTTGATTCAAAAGG
CTATGAAGACTCTCATGCAGGGTCGAACAAGCTTTGTCATTGCTCACCGTCTGTCAACTATCCAAGAGGCAGACAAGATT
TTGGTCCTTAAAGATGGTCAAATCATCGAACAAGGGAACCATGAATCCCTTCTTGCAGATAAAGGCTTCTATTACGATTT
GTATAATAGTCAGTTTGCAGAGAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(29-310)

ABC transporter (ABC_tran)

(373-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.185

100

0.422