Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   AS52_RS22525 Genome accession   NZ_CP010586
Coordinates   4459336..4461693 (-) Length   785 a.a.
NCBI ID   WP_047749816.1    Uniprot ID   A0A806TU08
Organism   Priestia megaterium Q3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4454336..4466693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS52_RS22510 (AS52_04650) alaS 4454646..4457279 (-) 2634 WP_033579667.1 alanine--tRNA ligase -
  AS52_RS22515 (AS52_04651) - 4457668..4458729 (-) 1062 WP_028411681.1 AI-2E family transporter -
  AS52_RS27030 (AS52_04652) - 4458843..4458977 (-) 135 WP_013059291.1 YrzQ family protein -
  AS52_RS22520 (AS52_04653) - 4459003..4459194 (-) 192 WP_013059292.1 hypothetical protein -
  AS52_RS22525 (AS52_04654) recD2 4459336..4461693 (-) 2358 WP_047749816.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AS52_RS22530 (AS52_04655) - 4461718..4462377 (-) 660 WP_013085089.1 lipopolysaccharide assembly protein LapB -
  AS52_RS22535 (AS52_04656) mnmA 4462535..4463647 (-) 1113 WP_028411683.1 tRNA 2-thiouridine(34) synthase MnmA -
  AS52_RS22540 (AS52_04657) - 4463754..4464896 (-) 1143 WP_028411684.1 cysteine desulfurase family protein -
  AS52_RS22545 (AS52_04658) cymR 4464920..4465336 (-) 417 WP_013059297.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88826.29 Da        Isoelectric Point: 5.1132

>NTDB_id=139449 AS52_RS22525 WP_047749816.1 4459336..4461693(-) (recD2) [Priestia megaterium Q3]
MNEELVNPSQPERHYISGTSIVTVFHNEENLYNVTRIRIKKTNLEIEDKETVVTGYFPKLNEDEVYTFYGDFKEHPKFGL
QFHVEQFKKELPQSRQGVVQYLSSDLFHGIGKKTAENIVDALGERAIFRILQNESVLKEVPRLSADKAEALVTQLREHQG
LEEVMVKLTDLGFGPQLSMKIFQAYKQEALEIVQNNPYQLVEDIQGIGFSRADELGKRLGMATNHPDRLRAGILYVIEQE
CNQMGHVYVTADQLYGKTAELLRKSRHENLSEMDLTREVDALKADKKLIIQDEKIYFPPLFYAEKGLVKAIQKIMAQTQY
EEQFPESEFLLALGELEERLDVQYAPSQRKGIQTALMSPMLLLTGGPGTGKTTVIKGIVELYAELHGCSLNPGDYKKDEA
FPVLLVAPTGRAAKRMSEATGLPAVTIHRLLKWNGQEGFDHNEENPIDGKLLIVDEVSMVDLWLAHQLFKSLPANLQVIL
VGDEDQLPSVGPGQVLKDLLSSEVVPTVRLTDVYRQAEGSSIIDLAHEIKKGKLPEDLSRQQGDRSFIRCHGQHITNVVQ
QVCGNALKKGYTAKDIQVLAPMYKGPAGIDKLNEVLQELFNPASEQRRELKHGDITYRVGDKVLQLVNQPDSNVFNGDMG
EIVSVFFAKENTEKQDMLVISYEGNEVTYTKQDFNQITHAYCCSIHKSQGSEFPIVVLPIVKSYYRMLRRNLLYTAVTRS
KQFLILCGEDEAFQLGVSRNEDSVRQTNLQPLLRESLDNDIEDPEIPFMKDANIGMENVTPYDFM

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=139449 AS52_RS22525 WP_047749816.1 4459336..4461693(-) (recD2) [Priestia megaterium Q3]
ATGAACGAAGAACTAGTGAACCCTTCACAGCCAGAACGTCATTATATAAGCGGCACGTCAATTGTAACGGTTTTTCATAA
CGAAGAAAACTTATATAACGTTACGCGGATACGGATCAAAAAAACAAATTTAGAGATTGAAGATAAAGAAACGGTCGTTA
CAGGCTATTTTCCTAAGCTTAATGAAGATGAAGTATACACATTTTACGGGGACTTCAAAGAGCATCCAAAGTTTGGTCTG
CAATTTCATGTTGAGCAGTTTAAAAAAGAACTTCCGCAATCAAGGCAAGGGGTTGTTCAGTACCTATCAAGCGATTTATT
TCACGGAATCGGTAAAAAAACCGCTGAAAATATTGTGGACGCCCTAGGAGAACGCGCTATTTTTCGTATTTTGCAAAATG
AGTCCGTGCTAAAAGAGGTTCCGAGGCTTTCAGCCGACAAGGCAGAGGCTTTAGTAACGCAGCTTCGTGAACATCAAGGG
TTAGAAGAAGTAATGGTAAAGCTGACAGACCTCGGGTTTGGACCGCAGCTTTCGATGAAGATTTTCCAAGCGTACAAACA
AGAAGCGCTTGAAATTGTTCAAAATAATCCTTATCAGCTCGTAGAAGATATTCAAGGTATTGGTTTTAGCAGGGCCGATG
AACTTGGAAAGAGGCTTGGTATGGCAACCAACCATCCTGATCGTTTGCGTGCAGGTATTTTATACGTCATTGAGCAAGAA
TGTAATCAAATGGGACATGTATACGTCACGGCAGATCAGCTGTATGGAAAAACAGCAGAGCTTCTTCGAAAAAGCAGGCA
TGAGAATCTGTCTGAAATGGATCTTACAAGAGAAGTGGACGCATTAAAAGCAGACAAAAAGCTTATCATTCAAGACGAAA
AAATTTATTTTCCTCCCCTTTTCTATGCTGAAAAAGGGCTGGTTAAAGCTATTCAAAAAATTATGGCCCAAACGCAATAC
GAAGAGCAGTTTCCAGAATCAGAATTTTTACTAGCTTTAGGTGAACTAGAAGAGCGATTAGACGTGCAATATGCACCGTC
TCAGCGCAAGGGCATACAAACTGCTTTAATGTCTCCAATGCTTCTTTTAACAGGTGGACCAGGTACAGGGAAAACAACGG
TTATTAAAGGAATAGTCGAACTCTATGCAGAACTTCACGGATGTTCGTTAAATCCAGGGGATTATAAAAAAGATGAAGCT
TTTCCTGTTTTACTTGTGGCACCTACTGGACGCGCTGCTAAACGAATGAGCGAAGCGACCGGACTTCCGGCAGTTACGAT
TCACAGATTATTAAAATGGAACGGACAAGAAGGATTTGACCATAATGAGGAGAATCCAATTGACGGAAAATTATTGATTG
TGGATGAAGTATCGATGGTAGATTTGTGGCTTGCTCATCAGCTGTTTAAGTCTCTTCCTGCTAATTTACAGGTTATTTTA
GTTGGAGACGAAGACCAGCTTCCTTCAGTAGGTCCGGGACAGGTGTTAAAAGATTTACTGAGTTCAGAAGTAGTTCCTAC
CGTCCGTCTGACAGATGTATACCGGCAAGCGGAAGGGTCATCGATTATTGATTTGGCTCATGAAATAAAAAAAGGAAAGC
TTCCGGAAGACTTATCGAGGCAGCAAGGAGATCGTTCCTTTATTCGCTGTCACGGACAGCACATCACGAATGTCGTGCAA
CAAGTTTGCGGGAATGCGTTAAAAAAAGGCTATACGGCTAAAGATATTCAAGTTCTAGCTCCTATGTATAAAGGTCCTGC
AGGGATTGATAAACTGAATGAAGTTCTTCAGGAATTATTTAACCCGGCTTCTGAGCAAAGAAGAGAGCTTAAGCACGGAG
ATATTACGTACCGAGTCGGAGATAAAGTGCTGCAGCTTGTAAATCAGCCGGATAGCAACGTATTTAACGGAGATATGGGA
GAAATCGTCTCAGTTTTCTTTGCCAAAGAAAATACGGAAAAACAGGATATGCTGGTTATTTCATATGAAGGAAACGAAGT
AACTTATACAAAGCAAGACTTTAATCAAATAACTCATGCATACTGCTGTTCCATTCATAAATCGCAGGGAAGTGAATTTC
CCATTGTTGTGCTTCCAATTGTCAAAAGCTATTACCGAATGCTGCGACGCAATTTACTTTATACCGCCGTTACGCGAAGT
AAACAGTTTTTAATTTTATGCGGCGAAGACGAAGCGTTTCAGCTTGGAGTCAGCCGGAATGAAGACAGCGTTCGACAAAC
GAATTTACAGCCCCTGCTTCGAGAAAGCTTGGATAACGACATAGAAGATCCCGAAATTCCATTTATGAAAGATGCAAATA
TTGGGATGGAAAACGTTACGCCGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-248)

AAA domain (AAA_30)

(344-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A806TU08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.939

99.618

0.637

Multiple sequence alignment