Detailed information NTG0138965

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: SC10_RS09355
• Genome accession: NZ_CP010524
• Coordinates: 1855988..1856767 (+)
• Length: 259 a.a.
• NCBI ID: WP_003181756.1
• Uniprot ID: A0A1Y0YKK2
• Organism: Bacillus paralicheniformis strain BL-09
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1850988..1861767

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SC10_RS09335 (SC10_B2orf02786)	trmFO	1851685..1852989 (+)	1305	WP_025811382.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
SC10_RS09340 (SC10_B2orf02787)	xerC	1853056..1853970 (+)	915	WP_025811383.1	tyrosine recombinase XerC	-
SC10_RS09345 (SC10_B2orf02788)	hslV	1853984..1854529 (+)	546	WP_020451384.1	ATP-dependent protease subunit HslV	-
SC10_RS09350 (SC10_B2orf02789)	hslU	1854546..1855949 (+)	1404	WP_025811384.1	HslU--HslV peptidase ATPase subunit	-
SC10_RS09355 (SC10_B2orf02790)	codY	1855988..1856767 (+)	780	WP_003181756.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
SC10_RS09360 (SC10_B2orf02791)	flgB	1857119..1857508 (+)	390	WP_020451387.1	flagellar basal body rod protein FlgB	-
SC10_RS09365 (SC10_B2orf02793)	flgC	1857508..1857960 (+)	453	WP_025811385.1	flagellar basal body rod protein FlgC	-
SC10_RS09370 (SC10_B2orf02795)	fliE	1857974..1858291 (+)	318	WP_020451389.1	flagellar hook-basal body complex protein FliE	-
SC10_RS09375 (SC10_B2orf02796)	fliF	1858342..1859943 (+)	1602	WP_020451390.1	flagellar basal-body MS-ring/collar protein FliF	-
SC10_RS09380 (SC10_B2orf02797)	fliG	1859957..1860973 (+)	1017	WP_020451391.1	flagellar motor switch protein FliG	-
SC10_RS09385 (SC10_B2orf02798)	fliH	1860957..1861724 (+)	768	WP_020451392.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29073.42 Da
• Isoelectric Point: 4.8196

>NTDB_id=138965 SC10_RS09355 WP_003181756.1 1855988..1856767(+) (codY) [Bacillus paralicheniformis strain BL-09]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=138965 SC10_RS09355 WP_003181756.1 1855988..1856767(+) (codY) [Bacillus paralicheniformis strain BL-09]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTTGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGACTATACAAAAAGCCTGTTC
AACATTCCGGAAACTTCATCCAACCTTGACATTAACAGCGAATATACGGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACAGTCGTTCCGATCATCGGAGGGGGCGAAAGACTCGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCTGAATATGGCGCAACGGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCTGAA
GAGATCGAAGAGGAAGCACGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCATTATCTTACAGTGAGCTTGAAGCAAT
TGAACATATTTTTGAAGAGCTTGACGGAAATGAAGGTCTGCTTGTCGCAAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAATGCGCTGCGCAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCATTAGGGATGAAAGGCACA
TACATTAAAGTCCTGAACAACAAATTTTTAATGGAATTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: A0A1Y0YKK2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	94.595	100	0.946
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467