Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   RC38_RS06280 Genome accession   NZ_CP010490
Coordinates   1204983..1205498 (-) Length   171 a.a.
NCBI ID   WP_002934393.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC532     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1199983..1210498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC38_RS09145 (RC38_06265) - 1200735..1201814 (-) 1080 Protein_1232 flagellin hook IN motif-containing protein -
  RC38_RS06270 (RC38_06270) - 1201897..1203723 (-) 1827 WP_002934395.1 motility associated factor glycosyltransferase family protein -
  RC38_RS06275 (RC38_06275) - 1203733..1204983 (-) 1251 WP_002934394.1 DUF2920 family protein -
  RC38_RS06280 (RC38_06280) ctsG 1204983..1205498 (-) 516 WP_002934393.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  RC38_RS06285 (RC38_06285) tsaD 1205499..1206506 (-) 1008 WP_002934392.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  RC38_RS06290 (RC38_06290) - 1206503..1207897 (-) 1395 WP_002934391.1 M99 family carboxypeptidase catalytic domain-containing protein -
  RC38_RS06295 (RC38_06295) dxr 1207899..1208969 (-) 1071 WP_002934390.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  RC38_RS06300 (RC38_06300) cdsA 1208966..1209691 (-) 726 WP_002934389.1 phosphatidate cytidylyltransferase -
  RC38_RS06305 (RC38_06305) - 1209700..1210038 (-) 339 WP_002855905.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18706.57 Da        Isoelectric Point: 6.4683

>NTDB_id=138284 RC38_RS06280 WP_002934393.1 1204983..1205498(-) (ctsG) [Campylobacter jejuni strain CJ677CC532]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGIENVDLSN
FNGVKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=138284 RC38_RS06280 WP_002934393.1 1204983..1205498(-) (ctsG) [Campylobacter jejuni strain CJ677CC532]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTAGGAATTTTAGCTGCTATTGCTTTGCCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAATAATCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGACCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGATTGAAAATGTCGATCTTAGTAAT
TTTAACGGCGTAAAAGAAGTAAATTTTCGTGTAGGTGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAGGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAGGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGCAATAAAGCTTGCGTGATCTTAAGCAAGAATGAAAATTTTAAAAATCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

95.322

100

0.953

Multiple sequence alignment