Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   RC21_RS06380 Genome accession   NZ_CP010488
Coordinates   1217576..1218091 (-) Length   171 a.a.
NCBI ID   WP_059110753.1    Uniprot ID   A0A5T1D046
Organism   Campylobacter jejuni strain CJ677CC092     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1212576..1223091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC21_RS06365 (RC21_06365) - 1212629..1214407 (-) 1779 WP_250530647.1 flagellin hook IN motif-containing protein -
  RC21_RS06370 (RC21_06370) - 1214490..1216316 (-) 1827 WP_002934395.1 motility associated factor glycosyltransferase family protein -
  RC21_RS06375 (RC21_06375) - 1216326..1217576 (-) 1251 WP_002934394.1 DUF2920 family protein -
  RC21_RS06380 (RC21_06380) ctsG 1217576..1218091 (-) 516 WP_059110753.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  RC21_RS06385 (RC21_06385) tsaD 1218092..1219099 (-) 1008 WP_002934392.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  RC21_RS06390 (RC21_06390) - 1219096..1220490 (-) 1395 WP_002934391.1 M99 family carboxypeptidase catalytic domain-containing protein -
  RC21_RS06395 (RC21_06395) dxr 1220492..1221562 (-) 1071 WP_002934390.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  RC21_RS06400 (RC21_06400) cdsA 1221559..1222284 (-) 726 WP_002934389.1 phosphatidate cytidylyltransferase -
  RC21_RS06405 (RC21_06405) - 1222293..1222631 (-) 339 WP_002855905.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18722.62 Da        Isoelectric Point: 6.4683

>NTDB_id=138231 RC21_RS06380 WP_059110753.1 1217576..1218091(-) (ctsG) [Campylobacter jejuni strain CJ677CC092]
MRKAFTILELVFVIVILGILAAIALLKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGIENVDLSN
FNGVKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=138231 RC21_RS06380 WP_059110753.1 1217576..1218091(-) (ctsG) [Campylobacter jejuni strain CJ677CC092]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTAGGAATTTTAGCTGCTATTGCTTTGCTAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAATAATCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGACCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGATTGAAAATGTCGATCTTAGTAAT
TTTAACGGCGTAAAAGAAGTAAATTTTCGTGTAGGTGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAGGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAGGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGCAATAAAGCTTGCGTGATCTTAAGCAAGAATGAAAATTTTAAAAATCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1D046

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.737

100

0.947

Multiple sequence alignment